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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.421322 (42 seq.)
>W131227931
AUFO01000011
Bacillota
Paenibacillus massiliensis DSM 21345 [AUFO]
574
644
+
Gly
TCC
[ENA]
¡û
>W131227952
AUFO01000012
Bacillota
Paenibacillus massiliensis DSM 21345 [AUFO]
2410
2480
+
Gly
TCC
[ENA]
¡û
>W131227986
AUFO01000038
Bacillota
Paenibacillus massiliensis DSM 21345 [AUFO]
618
688
+
Gly
TCC
[ENA]
¡û
>W131235933
AULX01000027
Bacillota
Paenibacillus pinihumi DSM 23905 [AULX]
1109
1182
+
Gly
TCC
[ENA]
¡û
>W131236349
AUMH01000034
Bacillota
Alicyclobacillus herbarius DSM 13609 [AUMH]
7635
7708
+
Gly
TCC
[ENA]
¡û
>W1711677809
MRTT01000008
Bacillota
Paenibacillus glucanolyticus [MRTT]
110805
110735
-
Gly
TCC
[ENA]
¡û
>W1711677836
MRTT01000054
Bacillota
Paenibacillus glucanolyticus [MRTT]
23231
23158
-
Gly
TCC
[ENA]
¡û
>WENV180164826
OAVJ01019383
[OAVJ] human gut metagenome; faeces
386
313
-
Gly
TCC
[ENA]
¢þ
>WENV180827626
ODKA01000622
[ODKA] human metagenome; G_DNA_Stool
2712
2639
-
Gly
TCC
[ENA]
¢þ
>WENV180914156
ODSV01013844
[ODSV] human metagenome; G_DNA_Stool
709
636
-
Gly
TCC
[ENA]
¢þ
>WENV181533794
OGHS01000084
[OGHS] metagenome; Human gut stool
24777
24704
-
Gly
TCC
[ENA]
¢þ
>WENV181947467
OGZD01005979
[OGZD] human gut metagenome; faeces
329
256
-
Gly
TCC
[ENA]
¢þ
>WENV182070298
OHFI01004992
[OHFI] human gut metagenome; feces
2532
2605
+
Gly
TCC
[ENA]
¢þ
>W141237095
BBIW01000001
Bacillota
Paenibacillus sp. TCA20 [BBIW]
623735
623662
-
Gly
TCC
[ENA]
¡û
>W141237126
BBIW01000007
Bacillota
Paenibacillus sp. TCA20 [BBIW]
271030
270960
-
Gly
TCC
[ENA]
¡û
>W141237164
BBIW01000014
Bacillota
Paenibacillus sp. TCA20 [BBIW]
1265
1338
+
Gly
TCC
[ENA]
¡û
>WENV182631886
OJKW01026941
[OJKW] metagenome; faeces
1056
983
-
Gly
TCC
[ENA]
¢þ
>WENV182684566
OJNY01000582
[OJNY] human gut metagenome; human gut
24839
24766
-
Gly
TCC
[ENA]
¢þ
>WENV182728674
OJPW01031099
[OJPW] human gut metagenome; stool sample
293
220
-
Gly
TCC
[ENA]
¢þ
>WENV183388271
OLYY01039320
[OLYY] human gut metagenome; feces
402
475
+
Gly
TCC
[ENA]
¢þ
>WENV170661072
JXWU01096515
[JXWU] soil metagenome; rice field; organic control Plot
71
144
+
Gly
TCC
[ENA]
¢þ
>C181027540
CP017705
Bacillota
Brevibacillus laterosporus DSM 25 [CP017705]
2353535
2353608
+
Gly
TCC
-
¡û
>C181027551
CP017705
Bacillota
Brevibacillus laterosporus DSM 25 [CP017705]
2494652
2494725
+
Gly
TCC
-
¡û
>C181027590
CP017705
Bacillota
Brevibacillus laterosporus DSM 25 [CP017705]
3878846
3878919
+
Gly
TCC
-
¡û
>C181027618
CP017705
Bacillota
Brevibacillus laterosporus DSM 25 [CP017705]
1205017
1204944
-
Gly
TCC
-
¡û
>C181081991
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
8127
8200
+
Gly
TCC
-
¡û
>C181082023
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
273872
273945
+
Gly
TCC
-
¡û
>C181082090
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
4548218
4548145
-
Gly
TCC
-
¡û
>C191044818
CP026520
Bacillota
Paenibacillus chitinolyticus KCCM 41400 [CP026520]
1198905
1198975
+
Gly
TCC
-
¡û
>C191044854
CP026520
Bacillota
Paenibacillus chitinolyticus KCCM 41400 [CP026520]
6363145
6363072
-
Gly
TCC
-
¡û
>W1910665296
MCHY01000005
Bacillota
Ammoniphilus oxalaticus RAOx-1 [MCHY]
2459
2532
+
Gly
TCC
[ENA]
¡û
>C11117541
HE577054
Bacillota
Paenibacillus polymyxa M1 [HE577054]
461260
461330
+
Gly
TCC
[Ensembl]
¡û
>C11117558
HE577054
Bacillota
Paenibacillus polymyxa M1 [HE577054]
584095
584165
+
Gly
TCC
[Ensembl]
¡û
>W1610067831
BCQV01000003
Bacillota
Alicyclobacillus shizuokensis NBRC 103103 [BCQV]
5294
5367
+
Gly
TCC
[ENA]
¡û
>W1610068791
BCRP01000005
Bacillota
Alicyclobacillus kakegawensis NBRC 103104 [BCRP]
214262
214189
-
Gly
TCC
[ENA]
¡û
>W1710044807
BBEA01000071
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
23657
23584
-
Gly
TCC
[ENA]
¡û
>W1710044830
BBEA01000083
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
18975
18902
-
Gly
TCC
[ENA]
¡û
>W1710044953
BBEC01000054
Bacillota
Paenibacillus sp. YK5 [BBEC]
33593
33520
-
Gly
TCC
[ENA]
¡û
>W1710044983
BBEC01000163
Bacillota
Paenibacillus sp. YK5 [BBEC]
1003
1076
+
Gly
TCC
[ENA]
¡û
>W1710065204
BCQV01000003
Bacillota
Alicyclobacillus shizuokensis NBRC 103103 [BCQV]
5294
5367
+
Gly
TCC
[ENA]
¡û
>W1710066164
BCRP01000005
Bacillota
Alicyclobacillus kakegawensis NBRC 103104 [BCRP]
214262
214189
-
Gly
TCC
[ENA]
¡û
>W1710578803
FPBV01000049
Bacillota
Alicyclobacillus macrosporangiidus [FPBV]
7539
7466
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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