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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.421458 (58 seq.)
>W1711128575
LUSO01000010
Bacillota
Clostridium baratii [LUSO]
87702
87775
+
Gly
TCC
[ENA]
¡û
>W1711128578
LUSO01000010
Bacillota
Clostridium baratii [LUSO]
88041
88114
+
Gly
TCC
[ENA]
¡û
>W1711128586
LUSO01000010
Bacillota
Clostridium baratii [LUSO]
88716
88789
+
Gly
TCC
[ENA]
¡û
>W1711128593
LUSO01000010
Bacillota
Clostridium baratii [LUSO]
89308
89381
+
Gly
TCC
[ENA]
¡û
>W1711462036
MJHL01000006
Bacillota
Clostridium baratii [MJHL]
4492
4419
-
Gly
TCC
[ENA]
¡û
>W1711462039
MJHL01000006
Bacillota
Clostridium baratii [MJHL]
4153
4080
-
Gly
TCC
[ENA]
¡û
>W1711462047
MJHL01000006
Bacillota
Clostridium baratii [MJHL]
3478
3405
-
Gly
TCC
[ENA]
¡û
>W1711462054
MJHL01000006
Bacillota
Clostridium baratii [MJHL]
2886
2813
-
Gly
TCC
[ENA]
¡û
>W1711462112
MJHM01000003
Bacillota
Clostridium baratii [MJHM]
4719
4646
-
Gly
TCC
[ENA]
¡û
>W1711462115
MJHM01000003
Bacillota
Clostridium baratii [MJHM]
4380
4307
-
Gly
TCC
[ENA]
¡û
>W1711462123
MJHM01000003
Bacillota
Clostridium baratii [MJHM]
3705
3632
-
Gly
TCC
[ENA]
¡û
>W1711462130
MJHM01000003
Bacillota
Clostridium baratii [MJHM]
3113
3040
-
Gly
TCC
[ENA]
¡û
>W1711462237
MJHN01000024
Bacillota
Clostridium baratii [MJHN]
4684
4611
-
Gly
TCC
[ENA]
¡û
>W1711462240
MJHN01000024
Bacillota
Clostridium baratii [MJHN]
4345
4272
-
Gly
TCC
[ENA]
¡û
>W1711462248
MJHN01000024
Bacillota
Clostridium baratii [MJHN]
3670
3597
-
Gly
TCC
[ENA]
¡û
>W1711462255
MJHN01000024
Bacillota
Clostridium baratii [MJHN]
3078
3005
-
Gly
TCC
[ENA]
¡û
>C171030625
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1453789
1453716
-
Gly
TCC
-
¡û
>C171030628
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1453448
1453375
-
Gly
TCC
-
¡û
>C171030636
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1452773
1452700
-
Gly
TCC
-
¡û
>C171030643
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1452181
1452108
-
Gly
TCC
-
¡û
>WENV181454664
OGED01020224
[OGED] metagenome; Human gut stool
232
159
-
Gly
TCC
[ENA]
¢þ
>WENV182938318
OKVD01002730
[OKVD] human gut metagenome; human gut
2347
2420
+
Gly
TCC
[ENA]
¢þ
>WENV182938321
OKVD01002730
[OKVD] human gut metagenome; human gut
2686
2759
+
Gly
TCC
[ENA]
¢þ
>WENV182938447
OKVD01011176
[OKVD] human gut metagenome; human gut
4
77
+
Gly
TCC
[ENA]
¢þ
>WENV182938454
OKVD01011176
[OKVD] human gut metagenome; human gut
597
670
+
Gly
TCC
[ENA]
¢þ
>WENV182950274
OKVR01001850
[OKVR] human gut metagenome; human gut
1290
1217
-
Gly
TCC
[ENA]
¢þ
>WENV182950281
OKVR01001850
[OKVR] human gut metagenome; human gut
627
554
-
Gly
TCC
[ENA]
¢þ
>WENV182952062
OKVV01001717
[OKVV] human gut metagenome; human gut
2418
2491
+
Gly
TCC
[ENA]
¢þ
>WENV182952070
OKVV01001717
[OKVV] human gut metagenome; human gut
3165
3238
+
Gly
TCC
[ENA]
¢þ
>WENV170188950
CEPB01103712
[CEPB] marine metagenome genome assembly TARA_057_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
188
115
-
Gly
TCC
[ENA]
¢þ
>WENV170220796
CEPZ01199370
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
956
883
-
Gly
TCC
[ENA]
¢þ
>WENV170854385
MDTA01187838
[MDTA] marine metagenome; seawater
38649
38722
+
Gly
TCC
[ENA]
¢þ
>C151014201
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1628525
1628598
+
Gly
TCC
[Ensembl]
¡û
>C151014204
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1628864
1628937
+
Gly
TCC
[Ensembl]
¡û
>C151014211
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1629540
1629613
+
Gly
TCC
[Ensembl]
¡û
>C151014218
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1630130
1630203
+
Gly
TCC
[Ensembl]
¡û
>W1511551772
JZTY01000019
Bacillota
Clostridium baratii 771-14 [JZTY]
358
285
-
Gly
TCC
[ENA]
¡û
>W1511551785
JZTY01000036
Bacillota
Clostridium baratii 771-14 [JZTY]
207
280
+
Gly
TCC
[ENA]
¡û
>W1610103133
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
19115
19042
-
Gly
TCC
[ENA]
¡û
>W1610103136
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
18777
18704
-
Gly
TCC
[ENA]
¡û
>W1610103144
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
18102
18029
-
Gly
TCC
[ENA]
¡û
>W1610103151
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
17512
17439
-
Gly
TCC
[ENA]
¡û
>W1610104223
CZBO01000006
Bacillota
Clostridium baratii [CZBO]
167240
167313
+
Gly
TCC
[ENA]
¡û
>W1610104226
CZBO01000006
Bacillota
Clostridium baratii [CZBO]
167578
167651
+
Gly
TCC
[ENA]
¡û
>W1610104254
CZBO01000019
Bacillota
Clostridium baratii [CZBO]
109
182
+
Gly
TCC
[ENA]
¡û
>W1610616832
LGRR01000017
Bacillota
Clostridium baratii [LGRR]
88606
88679
+
Gly
TCC
[ENA]
¡û
>W1610616835
LGRR01000017
Bacillota
Clostridium baratii [LGRR]
88946
89019
+
Gly
TCC
[ENA]
¡û
>W1610616849
LGRR01000018
Bacillota
Clostridium baratii [LGRR]
516
589
+
Gly
TCC
[ENA]
¡û
>W1710105888
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
19115
19042
-
Gly
TCC
[ENA]
¡û
>W1710105891
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
18777
18704
-
Gly
TCC
[ENA]
¡û
>W1710105899
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
18102
18029
-
Gly
TCC
[ENA]
¡û
>W1710105906
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
17512
17439
-
Gly
TCC
[ENA]
¡û
>W1710106927
CZBO01000006
Bacillota
Clostridium baratii [CZBO]
167240
167313
+
Gly
TCC
[ENA]
¡û
>W1710106930
CZBO01000006
Bacillota
Clostridium baratii [CZBO]
167578
167651
+
Gly
TCC
[ENA]
¡û
>W1710106958
CZBO01000019
Bacillota
Clostridium baratii [CZBO]
109
182
+
Gly
TCC
[ENA]
¡û
>W1710742171
LGRR01000017
Bacillota
Clostridium baratii [LGRR]
88606
88679
+
Gly
TCC
[ENA]
¡û
>W1710742174
LGRR01000017
Bacillota
Clostridium baratii [LGRR]
88946
89019
+
Gly
TCC
[ENA]
¡û
>W1710742188
LGRR01000018
Bacillota
Clostridium baratii [LGRR]
516
589
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK