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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.421887 (27 seq.)
>W131044154
AMQH01000018
Bacillota
Clostridium tunisiense TJ [AMQH]
18965
18891
-
Gln
TTG
[ENA]
¡û
>W131044158
AMQH01000018
Bacillota
Clostridium tunisiense TJ [AMQH]
18576
18502
-
Gln
TTG
[ENA]
¡û
>W131044198
AMQH01000036
Bacillota
Clostridium tunisiense TJ [AMQH]
1643
1569
-
Gln
TTG
[ENA]
¡û
>C171030479
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
3147949
3147875
-
Gln
TTG
-
¡û
>C171030486
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
3147327
3147253
-
Gln
TTG
-
¡û
>C171030510
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
116639
116565
-
Gln
TTG
-
¡û
>W141082927
AUPA01000008
Bacillota
Clostridium sp. BL8 [AUPA]
124
50
-
Gln
TTG
[ENA]
¡û
>W141082964
AUPA01000107
Bacillota
Clostridium sp. BL8 [AUPA]
475
549
+
Gln
TTG
[ENA]
¡û
>WENV181204001
OERX01014651
[OERX] metagenome; Caecal content
743
669
-
Gln
TTG
[ENA]
¢þ
>WENV181204341
OERY01013993
[OERY] metagenome; Caecal content
564
638
+
Gln
TTG
[ENA]
¢þ
>W141239884
CAEV01000138
Bacillota
Clostridium senegalense JC122 [CAEV]
161
87
-
Gln
TTG
[ENA]
¡û
>W141265345
CCFF01000015
Bacillota
Clostridium culturomicium CL-6 [CCFF]
523962
523888
-
Gln
TTG
[ENA]
¡û
>W141265370
CCFF01000016
Bacillota
Clostridium culturomicium CL-6 [CCFF]
115826
115752
-
Gln
TTG
[ENA]
¡û
>W141265377
CCFF01000016
Bacillota
Clostridium culturomicium CL-6 [CCFF]
115227
115153
-
Gln
TTG
[ENA]
¡û
>WENV170655480
JTFN01036051
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
144
70
-
Gln
TTG
[ENA]
¢þ
>C191222065
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
735973
736047
+
Gln
TTG
-
¡û
>C191222074
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
736827
736901
+
Gln
TTG
-
¡û
>C191222083
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
737681
737755
+
Gln
TTG
-
¡û
>W141806523
JPMD01000070
Bacillota
Clostridium sulfidigenes [JPMD]
752
826
+
Gln
TTG
[ENA]
¡û
>W141806535
JPMD01000086
Bacillota
Clostridium sulfidigenes [JPMD]
255
329
+
Gln
TTG
[ENA]
¡û
>W1911491709
OAOI01000040
Bacillota
Clostridium thiosulfatireducens [OAOI]
250
324
+
Gln
TTG
[ENA]
¡û
>W1911491723
OAOI01000062
Bacillota
Clostridium thiosulfatireducens [OAOI]
1446
1372
-
Gln
TTG
[ENA]
¡û
>W1510060589
CCXK01000015
Bacillota
Clostridium culturomicium CL-6 [CCXK]
523962
523888
-
Gln
TTG
[ENA]
¡û
>W1510060614
CCXK01000016
Bacillota
Clostridium culturomicium CL-6 [CCXK]
115826
115752
-
Gln
TTG
[ENA]
¡û
>W1510060621
CCXK01000016
Bacillota
Clostridium culturomicium CL-6 [CCXK]
115227
115153
-
Gln
TTG
[ENA]
¡û
>W1610604830
LFRG01000164
Bacillota
Clostridium sp. ATCC 25772 [LFRG]
145
219
+
Gln
TTG
[ENA]
¡û
>W1710586769
FQXL01000041
Bacillota
Clostridium magnum DSM 2767 [FQXL]
35969
35895
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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