This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.422590 (12 seq.)
>W1711399356
MFED01000058
Unclassified
Candidatus Delongbacteria bacterium GWF2_40_14 [MFED]
10651
10579
-
Gly
CCC
[ENA]
¡û
>W1711416699
MHDW01000218
Nitrospirota
Nitrospirae bacterium GWC2_42_7 [MHDW]
1246
1320
+
Gly
GCC
[ENA]
¡û
>W1711417094
MHEJ01000081
Nitrospirota
Nitrospirae bacterium RBG_16_43_8 [MHEJ]
15091
15017
-
Gly
GCC
[ENA]
¡û
>W1711417216
MHEY01000264
Nitrospirota
Nitrospirae bacterium RIFOXYC2_FULL_44_7 [MHEY]
2885
2811
-
Gly
GCC
[ENA]
¡û
>WENV180277244
OBHV01140964
[OBHV] metagenome; water
80
8
-
Gly
GCC
[ENA]
¢þ
>WENV181208037
OFBA01011105
[OFBA] metagenome; hydrothermal vent
200
126
-
Gly
GCC
[ENA]
¢þ
>W141204218
AZJI01000009
Campylobacterota
Helicobacter macacae MIT 99-5501 [AZJI]
39697
39771
+
Gly
GCC
[ENA]
¡û
>W141204264
AZJJ01000007
Campylobacterota
Helicobacter canis NCTC 12740 [AZJJ]
394645
394571
-
Gly
GCC
[ENA]
¡û
>WENV183685463
ORMF010853598
[ORMF] groundwater metagenome; groundwater
41
115
+
Gly
GCC
[ENA]
¢þ
>WENV170773528
LXNJ01007515
[LXNJ] sponge metagenome; marine sponge reef
4154
4080
-
Gly
GCC
[ENA]
¢þ
>W1910549739
FZPO01000002
Campylobacterota
Helicobacter equorum [FZPO]
22808
22734
-
Gly
GCC
[ENA]
¡û
>W1511353850
JRPR01000039
Campylobacterota
Helicobacter jaachi MIT 09-6949 [JRPR]
540
466
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK