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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.423275 (64 seq.)
>C171127486
CP021996
Chlamydiota
Chlamydia abortus GN6 [CP021996]
778676
778605
-
Thr
GGT
-
¡û
>C171131257
LT821323
Chlamydiota
Chlamydia suis [LT821323]
390104
390033
-
Thr
GGT
-
¡û
>W131210920
ATKW01000244
Chlamydiota
Chlamydia psittaci 03DC29 [ATKW]
4173
4102
-
Thr
GGT
[ENA]
¡û
>W131211202
ATLE01000023
Chlamydiota
Chlamydia psittaci 03DC35 [ATLE]
91852
91781
-
Thr
GGT
[ENA]
¡û
>W131211454
ATMU01000496
Chlamydiota
Chlamydia psittaci 02DC14 [ATMU]
872
801
-
Thr
GGT
[ENA]
¡û
>W131211563
ATMW01000088
Chlamydiota
Chlamydia psittaci 09DC79 [ATMW]
50192
50121
-
Thr
GGT
[ENA]
¡û
>W131211707
ATNA01000061
Chlamydiota
Chlamydia psittaci C6/98 [ATNA]
9858
9787
-
Thr
GGT
[ENA]
¡û
>C005580
AP006861
Chlamydiota
Chlamydia felis Fe/C-56 [AP006861]
359685
359756
+
Thr
GGT
[Ensembl]
¡û
>C006658
AE001363
Chlamydiota
Chlamydia pneumoniae CWL029 [AE001363]
89657
89728
+
Thr
GGT
[Ensembl]
¡û
>WENV180027193
FTIX01000395
[FTIX] metagenome; soil
8821
8748
-
Thr
GGT
[ENA]
¢þ
>W141201352
AZBC01000014
Chlamydiota
Chlamydia pecorum MC/MarsBar [AZBC]
136553
136482
-
Thr
GGT
[ENA]
¡û
>W141207180
AZNB01000089
Chlamydiota
Chlamydia pneumoniae B21 [AZNB]
7823
7752
-
Thr
GGT
[ENA]
¡û
>WENV183794311
PVBE010085484
[PVBE] marine metagenome; water
2470
2543
+
Thr
GGT
[ENA]
¢þ
>WENV170351038
CETH01121473
[CETH] marine metagenome genome assembly TARA_122_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
340
411
+
Thr
GGT
[ENA]
¢þ
>C181100090
CP024455
Chlamydiota
Chlamydia psittaci GIMC 2004:CpsAP23 [CP024455]
806556
806485
-
Thr
GGT
-
¡û
>C181203789
LS398098
Chlamydiota
Chlamydia suis [LS398098]
396942
396871
-
Thr
GGT
-
¡û
>C181203826
LS398099
Chlamydiota
Chlamydia suis [LS398099]
395701
395630
-
Thr
GGT
-
¡û
>C181232431
LT999999
Chlamydiota
Chlamydia suis [LT999999]
389730
389659
-
Thr
GGT
-
¡û
>W1910236693
FPII01000001
Chlamydiota
Chlamydia abortus FAG [FPII]
299004
299075
+
Thr
GGT
[ENA]
¡û
>W1910236926
FPIN01000003
Chlamydiota
Chlamydia abortus A-58 [FPIN]
93951
93880
-
Thr
GGT
[ENA]
¡û
>W1910237991
FPLQ01000001
Chlamydiota
Chlamydia abortus C2_98 [FPLQ]
90236
90165
-
Thr
GGT
[ENA]
¡û
>W1910238077
FPLU01000001
Chlamydiota
Chlamydia abortus 99DC1 [FPLU]
687185
687256
+
Thr
GGT
[ENA]
¡û
>W1910238345
FPMB01000001
Chlamydiota
Chlamydia abortus C18_98 [FPMB]
1050775
1050846
+
Thr
GGT
[ENA]
¡û
>W1910238443
FPMD01000001
Chlamydiota
Chlamydia abortus C13_98 [FPMD]
90247
90176
-
Thr
GGT
[ENA]
¡û
>W1910238545
FPMG01000001
Chlamydiota
Chlamydia abortus 99DC2 [FPMG]
1051092
1051163
+
Thr
GGT
[ENA]
¡û
>W1910270629
FQLK01000001
Chlamydiota
Chlamydia abortus 11_01 [FQLK]
90243
90172
-
Thr
GGT
[ENA]
¡û
>W1910270858
FQLQ01000001
Chlamydiota
Chlamydia abortus 162STDY5437300 [FQLQ]
1051186
1051257
+
Thr
GGT
[ENA]
¡û
>W1910280594
FQSZ01000001
Chlamydiota
Chlamydia abortus S3_3 [FQSZ]
684469
684540
+
Thr
GGT
[ENA]
¡û
>W1910339279
FSSF02000121
Chlamydiota
Chlamydia suis [FSSF]
5483
5412
-
Thr
GGT
[ENA]
¡û
>W1910339314
FSSG02000010
Chlamydiota
Chlamydia suis [FSSG]
50173
50102
-
Thr
GGT
[ENA]
¡û
>W1910341404
FTPV01000001
Chlamydiota
Chlamydia suis [FTPV]
388636
388565
-
Thr
GGT
[ENA]
¡û
>W1910341418
FTPW01000002
Chlamydiota
Chlamydia suis [FTPW]
343206
343135
-
Thr
GGT
[ENA]
¡û
>W1910341456
FTPX01000002
Chlamydiota
Chlamydia suis [FTPX]
217722
217651
-
Thr
GGT
[ENA]
¡û
>W1910341492
FTPY01000001
Chlamydiota
Chlamydia suis [FTPY]
398483
398412
-
Thr
GGT
[ENA]
¡û
>W1910341528
FTPZ01000001
Chlamydiota
Chlamydia suis [FTPZ]
390118
390047
-
Thr
GGT
[ENA]
¡û
>W1910341565
FTQA01000001
Chlamydiota
Chlamydia suis [FTQA]
389749
389678
-
Thr
GGT
[ENA]
¡û
>W1910341676
FTQD01000001
Chlamydiota
Chlamydia suis [FTQD]
401167
401096
-
Thr
GGT
[ENA]
¡û
>W1910341737
FTQE01000001
Chlamydiota
Chlamydia suis [FTQE]
395701
395630
-
Thr
GGT
[ENA]
¡û
>W1910341751
FTQF01000002
Chlamydiota
Chlamydia suis [FTQF]
339888
339817
-
Thr
GGT
[ENA]
¡û
>W1910341795
FTQG01000003
Chlamydiota
Chlamydia suis [FTQG]
111817
111746
-
Thr
GGT
[ENA]
¡û
>W1910341863
FTQI01000002
Chlamydiota
Chlamydia suis [FTQI]
342903
342832
-
Thr
GGT
[ENA]
¡û
>W1910341922
FTQJ01000001
Chlamydiota
Chlamydia suis [FTQJ]
395640
395569
-
Thr
GGT
[ENA]
¡û
>W1910341943
FTQK01000004
Chlamydiota
Chlamydia suis [FTQK]
92538
92467
-
Thr
GGT
[ENA]
¡û
>W1910341998
FTQL01000002
Chlamydiota
Chlamydia suis [FTQL]
181442
181371
-
Thr
GGT
[ENA]
¡û
>W1910342009
FTQM01000001
Chlamydiota
Chlamydia suis [FTQM]
398651
398580
-
Thr
GGT
[ENA]
¡û
>W1910342072
FTQN01000005
Chlamydiota
Chlamydia suis [FTQN]
181158
181087
-
Thr
GGT
[ENA]
¡û
>W1910342115
FTQO01000003
Chlamydiota
Chlamydia suis [FTQO]
108913
108842
-
Thr
GGT
[ENA]
¡û
>W1910342120
FTQP01000001
Chlamydiota
Chlamydia suis [FTQP]
401190
401119
-
Thr
GGT
[ENA]
¡û
>W1910342158
FTQQ01000001
Chlamydiota
Chlamydia suis [FTQQ]
398384
398313
-
Thr
GGT
[ENA]
¡û
>W1910342193
FTQR01000001
Chlamydiota
Chlamydia suis [FTQR]
385717
385646
-
Thr
GGT
[ENA]
¡û
>W1910342255
FTQS01000001
Chlamydiota
Chlamydia suis [FTQS]
398498
398427
-
Thr
GGT
[ENA]
¡û
>W1910342329
FTQU01000001
Chlamydiota
Chlamydia suis [FTQU]
388866
388795
-
Thr
GGT
[ENA]
¡û
>W1910342366
FTQV01000001
Chlamydiota
Chlamydia suis [FTQV]
396942
396871
-
Thr
GGT
[ENA]
¡û
>C151104716
LN847000
Chlamydiota
Chlamydia pneumoniae [LN847000]
89652
89723
+
Thr
GGT
[Ensembl]
¡û
>W10107286
ACZE01000004
Chlamydiota
Parachlamydia acanthamoebae str. Hall's coccus [ACZE]
73647
73720
+
Thr
GGT
[ENA]
¡û
>W1510004646
BAWW01000008
Chlamydiota
Parachlamydia acanthamoebae Bn9 [BAWW]
312718
312645
-
Thr
GGT
[ENA]
¡û
>C10105585
CP001928
Chlamydiota
Waddlia chondrophila WSU 86-1044 [CP001928]
630918
630991
+
Thr
GGT
[Ensembl]
¡û
>W11109575
ACZE01000004
Chlamydiota
Parachlamydia acanthamoebae str. Hall's coccus [ACZE]
73647
73720
+
Thr
GGT
[ENA]
¡û
>C11120943
FR872582
Chlamydiota
Simkania negevensis Z [FR872582]
1586454
1586381
-
Thr
GGT
[Ensembl]
¡û
>C121016920
FQ482149
Chlamydiota
Chlamydia psittaci RD1 [FQ482149]
798451
798380
-
Thr
GGT
-
¡û
>W1610003453
AFVN01000002
Chlamydiota
Chlamydia psittaci CP3 [AFVN]
94134
94063
-
Thr
GGT
[ENA]
¡û
>C131006809
CP003791
Chlamydiota
Chlamydia psittaci GR9 [CP003791]
787089
787018
-
Thr
GGT
[Ensembl]
¡û
>WENV075613
AACY024044822
Marine microbial communities from Global Ocean Sampling (GOS)
82
156
+
Thr
GGT
[ENA]
>W1710004085
AFVN01000002
Chlamydiota
Chlamydia psittaci CP3 [AFVN]
94134
94063
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK