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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.423412 (123 seq.)
>W1710863684
LMFI01000001
Actinomycetota
Nocardioides sp. Root140 [LMFI]
900705
900633
-
Val
GAC
[ENA]
¡û
>W1710863747
LMFJ01000001
Actinomycetota
Aeromicrobium sp. Root495 [LMFJ]
1172399
1172325
-
Val
GAC
[ENA]
¡û
>W1710865634
LMGV01000006
Actinomycetota
Nocardioides sp. Root614 [LMGV]
421875
421803
-
Val
GAC
[ENA]
¡û
>W1710866329
LMHJ01000002
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
421887
421815
-
Val
GAC
[ENA]
¡û
>W1710872648
LMMD01000013
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
124044
124116
+
Val
GAC
[ENA]
¡û
>W1710874225
LMNK01000004
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
333233
333161
-
Val
GAC
[ENA]
¡û
>W1710874326
LMNM01000004
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
127843
127915
+
Val
GAC
[ENA]
¡û
>W1710880886
LMSQ01000017
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
749476
749404
-
Val
GAC
[ENA]
¡û
>W1710880956
LMSR01000020
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
248520
248446
-
Val
GAC
[ENA]
¡û
>W1710881086
LMSU01000003
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
319259
319185
-
Val
GAC
[ENA]
¡û
>W1711125336
LUNF01000025
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
22251
22325
+
Val
GAC
[ENA]
¡û
>W1711125382
LUNG01000021
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
4720
4794
+
Val
GAC
[ENA]
¡û
>W1711125458
LUNH01000092
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
16674
16748
+
Val
GAC
[ENA]
¡û
>W1711125489
LUNI01000018
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
4769
4843
+
Val
GAC
[ENA]
¡û
>W131206150
ATFL01000014
Actinomycetota
Propionibacterium sp. oral taxon 192 oral taxon 192 str. F0372 [ATFL]
652628
652554
-
Val
GAC
[ENA]
¡û
>W131217868
ATXE01000002
Actinomycetota
Aestuariimicrobium kwangyangense DSM 21549 [ATXE]
166822
166896
+
Val
GAC
[ENA]
¡û
>W131230899
AUIA01000003
Actinomycetota
Propionicicella superfundia DSM 22317 [AUIA]
50063
50137
+
Val
GAC
[ENA]
¡û
>W1711430453
MIJB01000018
Actinomycetota
Aeromicrobium sp. PE09-221 [MIJB]
27209
27135
-
Val
GAC
[ENA]
¡û
>W1711717991
MTHC01000001
Actinomycetota
Tessaracoccus sp. ZS01 [MTHC]
481537
481611
+
Val
GAC
[ENA]
¡û
>W1712084142
NHQT01000015
Actinomycetota
Nocardioides sp. XL1 [NHQT]
185
111
-
Val
GAC
[ENA]
¡û
>W131217030
ATWJ01000009
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
27109
27035
-
Val
GAC
[ENA]
¡û
>W131227906
AUFN01000014
Actinomycetota
Nocardioides alkalitolerans DSM 16699 [AUFN]
46151
46225
+
Val
GAC
[ENA]
¡û
>W131190795
ASEP01000079
Actinomycetota
Nocardioides sp. CF8 [ASEP]
21862
21788
-
Val
GAC
[ENA]
¡û
>W131229362
AUGT01000002
Actinomycetota
Nocardioides halotolerans DSM 19273 [AUGT]
150309
150235
-
Val
GAC
[ENA]
¡û
>WENV180111534
OAPN01101580
[OAPN] marine metagenome; 2011
189
261
+
Val
GAC
[ENA]
¢þ
>WENV180327782
OBKT01495596
[OBKT] soil metagenome; soil
89
163
+
Val
GAC
[ENA]
¢þ
>WENV180360493
OBNU01000206
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
5973
6047
+
Val
GAC
[ENA]
¢þ
>WENV180363769
OBNZ01005779
[OBNZ] marine metagenome; ENVO:00002010
354
280
-
Val
GAC
[ENA]
¢þ
>WENV180476684
OBYY01005720
[OBYY] human gut metagenome; faeces
154
82
-
Val
GAC
[ENA]
¢þ
>WENV180793205
ODIW01010486
[ODIW] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV180816905
ODJP01107027
[ODJP] human metagenome; G_DNA_Tongue dorsum
56
128
+
Val
GAC
[ENA]
¢þ
>WENV180855017
ODKX01023569
[ODKX] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV180866891
ODLJ01150599
[ODLJ] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV180874076
ODLP01137454
[ODLP] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV180875164
ODLQ01041114
[ODLQ] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV180901308
ODOJ01126163
[ODOJ] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV180950345
ODUG01192431
[ODUG] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV180954513
ODUJ01003264
[ODUJ] human metagenome; G_DNA_Tongue dorsum
6096
6168
+
Val
GAC
[ENA]
¢þ
>WENV180968976
ODUT01159784
[ODUT] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV180989135
ODVL01046571
[ODVL] human metagenome; G_DNA_Tongue dorsum
413
485
+
Val
GAC
[ENA]
¢þ
>WENV180991426
ODVN01084610
[ODVN] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV181021779
ODWV01044321
[ODWV] human metagenome; G_DNA_Tongue dorsum
422
494
+
Val
GAC
[ENA]
¢þ
>WENV181033254
ODXN01003870
[ODXN] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV181046099
ODXW01006782
[ODXW] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV181069724
ODZZ01201012
[ODZZ] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV181120603
OEFK01016328
[OEFK] marine metagenome; ENVO:00002010 seawater
84
10
-
Val
GAC
[ENA]
¢þ
>WENV181128989
OEFX01001714
[OEFX] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV181172110
OEIV010492509
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
145
219
+
Val
GAC
[ENA]
¢þ
>WENV181217623
OFCL01000001
[OFCL] metagenome; Human gut stool
258672
258744
+
Val
GAC
[ENA]
¢þ
>WENV181218613
OFCN01000001
[OFCN] metagenome; Human gut stool
552
480
-
Val
GAC
[ENA]
¢þ
>WENV181298506
OFHL01123242
[OFHL] soil metagenome; Clay
178
252
+
Val
GAC
[ENA]
¢þ
>WENV181370856
OFQT01021338
[OFQT] freshwater metagenome; Freshwater Lake
245
317
+
Val
GAC
[ENA]
¢þ
>W141241053
CAGY01000001
Actinomycetota
Actinomyces sp. ph3 [CAGY]
169818
169746
-
Val
GAC
[ENA]
¡û
>W141241394
CAHG01000016
Actinomycetota
Aeromicrobium massiliense JC14 [CAHG]
380857
380785
-
Val
GAC
[ENA]
¡û
>W141243036
CAJC01000035
Actinomycetota
Tetrasphaera jenkinsii Ben 74 [CAJC]
9727
9653
-
Val
GAC
[ENA]
¡û
>WENV183062521
OLID01029969
[OLID] seawater metagenome; Sea water
486
560
+
Val
GAC
[ENA]
¢þ
>WENV170602773
FUWD010263042
[FUWD] metagenome; unknown
562
636
+
Val
GAC
[ENA]
¢þ
>WENV170729053
LULF01006241
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
96
170
+
Val
GAC
[ENA]
¢þ
>WENV170729614
LULG01000021
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
16674
16748
+
Val
GAC
[ENA]
¢þ
>WENV170732518
LULJ01000056
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
4720
4794
+
Val
GAC
[ENA]
¢þ
>WENV170736191
LULM01000042
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
22251
22325
+
Val
GAC
[ENA]
¢þ
>WENV170759217
LUMS01006340
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
194
268
+
Val
GAC
[ENA]
¢þ
>WENV170759664
LUMT01000093
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
4769
4843
+
Val
GAC
[ENA]
¢þ
>WENV170762002
LUMW01000378
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
1637
1563
-
Val
GAC
[ENA]
¢þ
>W09127774
ACLF01000901
Actinomycetota
Aeromicrobium marinum DSM 15272 [ACLF]
2994
2920
-
Val
GAC
[ENA]
¡û
>WENV170975222
MTKY01097596
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
207
279
+
Val
GAC
[ENA]
¢þ
>C181119564
CP025581
Actinomycetota
Nocardioides houyundeii 78 [CP025581]
2261165
2261239
+
Val
GAC
-
¡û
>C181144025
CP026952
Actinomycetota
Aeromicrobium chenweiae 592 [CP026952]
2184024
2184096
+
Val
GAC
-
¡û
>C191007062
AP019307
Actinomycetota
Nocardioides baekrokdamisoli KCTC 39748 [AP019307]
323740
323814
+
Val
GAC
-
¡û
>C191051475
CP027482
Actinomycetota
Aeromicrobium sp. A1-2 [CP027482]
1917306
1917380
+
Val
GAC
-
¡û
>C191211182
LR134442
Actinomycetota
Propionibacterium australiense NCTC13651 [LR134442]
1175461
1175535
+
Val
GAC
-
¡û
>W141564353
JIAR01000027
Actinomycetota
Nocardioides sp. URHA0020 [JIAR]
162060
161986
-
Val
GAC
[ENA]
¡û
>W141730507
JNIK01000005
Actinomycetota
Blastococcus sp. URHD0036 [JNIK]
53339
53265
-
Val
GAC
[ENA]
¡û
>W1910377743
FUKQ01000044
Actinomycetota
Luteococcus japonicus LSP_Lj1 [FUKQ]
53250
53176
-
Val
GAC
[ENA]
¡û
>W1911538351
OMOH01000001
Actinomycetota
Propionibacterium ruminifibrarum JV5 [OMOH]
421869
421795
-
Val
GAC
[ENA]
¡û
>W1911709297
QPKK01000045
Actinomycetota
Desertihabitans aurantiacus CPCC 204711 [QPKK]
7223
7149
-
Val
GAC
[ENA]
¡û
>W1911798437
QYRP01000002
Actinomycetota
Nocardioides cavernaquae K1W22B-1 [QYRP]
3195894
3195820
-
Val
GAC
[ENA]
¡û
>W1810089826
PGEZ01000001
Actinomycetota
Mumia flava DSM 27763 [PGEZ]
95030
95104
+
Val
GAC
[ENA]
¡û
>W1810427533
PYXZ01000012
Actinomycetota
Nocardioides currus IB-3 [PYXZ]
46088
46162
+
Val
GAC
[ENA]
¡û
>W1810462633
PZYX01000009
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
113410
113482
+
Val
GAC
[ENA]
¡û
>W1810577892
QEOO01000036
Actinomycetota
Nocardioides speluncae YIM ART13 [QEOO]
225359
225285
-
Val
GAC
[ENA]
¡û
>W1810626233
QHKY01000002
Actinomycetota
Nocardioides gilvus XZ17 [QHKY]
218264
218190
-
Val
GAC
[ENA]
¡û
>W1810626235
QHKY01000002
Actinomycetota
Nocardioides gilvus XZ17 [QHKY]
217932
217858
-
Val
GAC
[ENA]
¡û
>W1810626262
QHKZ01000001
Actinomycetota
Nocardioides daejeonensis MJ31 [QHKZ]
918500
918428
-
Val
GAC
[ENA]
¡û
>W1810744366
QOUI01000001
Actinomycetota
Desertihabitans brevis 16Sb5-5 [QOUI]
526185
526259
+
Val
GAC
[ENA]
¡û
>W1810756456
QPFD01000004
Actinomycetota
Nocardioides houyundeii 601 [QPFD]
158467
158393
-
Val
GAC
[ENA]
¡û
>W1810870299
QUBR01000002
Actinomycetota
Aeromicrobium endophyticum M2KJ-4 [QUBR]
372486
372558
+
Val
GAC
[ENA]
¡û
>C151077118
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
3126674
3126748
+
Val
GAC
-
¡û
>W1510060528
CCXJ01000642
Actinomycetota
Nocardioides massiliensis GD13 [CCXJ]
480
554
+
Val
GAC
[ENA]
¡û
>C11111440
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
2135003
2134929
-
Val
GAC
[Ensembl]
¡û
>W1511351002
JRMV01000281
Actinomycetota
Actinomyces sp. S6-Spd3 [JRMV]
450097
450169
+
Val
GAC
[ENA]
¡û
>W1511398114
JTDJ01000112
Actinomycetota
Mumia flava MUSC 201 [JTDJ]
29619
29693
+
Val
GAC
[ENA]
¡û
>W1511460301
JVLH01000013
Actinomycetota
Trueperella pyogenes 331_TPYO [JVLH]
55
127
+
Val
GAC
[ENA]
¡û
>W11187389
CAEF01000456
Actinomycetota
Aeromicrobium massiliense JC14 [CAEF]
18237
18165
-
Val
GAC
[ENA]
¡û
>C161036385
CP011502
Actinomycetota
Aeromicrobium erythreum AR18 [CP011502]
2123448
2123522
+
Val
GAC
[Ensembl]
¡û
>W1610027083
AVPI01000029
Actinomycetota
Knoellia flava TL1 [AVPI]
32994
32920
-
Val
GAC
[ENA]
¡û
>W1610027155
AVPK01000002
Actinomycetota
Knoellia subterranea KCTC 19937 [AVPK]
198266
198340
+
Val
GAC
[ENA]
¡û
>W1610051587
BBHA01000015
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
4169
4095
-
Val
GAC
[ENA]
¡û
>W1610051604
BBHA01000497
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
282
357
+
Val
GAC
[ENA]
¡û
>W1610068475
BCRJ01000018
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
11080
11154
+
Val
GAC
[ENA]
¡û
>W1610726030
LMFI01000001
Actinomycetota
Nocardioides sp. Root140 [LMFI]
900705
900633
-
Val
GAC
[ENA]
¡û
>W1610726093
LMFJ01000001
Actinomycetota
Aeromicrobium sp. Root495 [LMFJ]
1172399
1172325
-
Val
GAC
[ENA]
¡û
>W1610727980
LMGV01000006
Actinomycetota
Nocardioides sp. Root614 [LMGV]
421875
421803
-
Val
GAC
[ENA]
¡û
>W1610728675
LMHJ01000002
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
421887
421815
-
Val
GAC
[ENA]
¡û
>W1610734994
LMMD01000013
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
124044
124116
+
Val
GAC
[ENA]
¡û
>W1610736571
LMNK01000004
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
333233
333161
-
Val
GAC
[ENA]
¡û
>W1610736672
LMNM01000004
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
127843
127915
+
Val
GAC
[ENA]
¡û
>W1610743232
LMSQ01000017
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
749476
749404
-
Val
GAC
[ENA]
¡û
>W1610743302
LMSR01000020
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
248520
248446
-
Val
GAC
[ENA]
¡û
>W1610743432
LMSU01000003
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
319259
319185
-
Val
GAC
[ENA]
¡û
>W1610936269
LUNF01000025
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
22251
22325
+
Val
GAC
[ENA]
¡û
>W1610936315
LUNG01000021
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
4720
4794
+
Val
GAC
[ENA]
¡û
>W1610936391
LUNH01000092
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
16674
16748
+
Val
GAC
[ENA]
¡û
>W1610936422
LUNI01000018
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
4769
4843
+
Val
GAC
[ENA]
¡û
>W1710023248
AVPI01000029
Actinomycetota
Knoellia flava TL1 [AVPI]
32994
32920
-
Val
GAC
[ENA]
¡û
>W1710023320
AVPK01000002
Actinomycetota
Knoellia subterranea KCTC 19937 [AVPK]
198266
198340
+
Val
GAC
[ENA]
¡û
>W1710047965
BBHA01000015
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
4169
4095
-
Val
GAC
[ENA]
¡û
>W1710047982
BBHA01000497
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
282
357
+
Val
GAC
[ENA]
¡û
>W1710065848
BCRJ01000018
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
11080
11154
+
Val
GAC
[ENA]
¡û
>W1710521728
FNGP01000005
Actinomycetota
Tessaracoccus oleiagri [FNGP]
196383
196309
-
Val
GAC
[ENA]
¡û
>W1710548977
FOEE01000007
Actinomycetota
Trujillella endophytica endophyticus [FOEE]
145422
145496
+
Val
GAC
[ENA]
¡û
>W1710552653
FOGZ01000004
Actinomycetota
Propionibacterium cyclohexanicum [FOGZ]
11732
11658
-
Val
GAC
[ENA]
¡û
>W1710552744
FOHB01000002
Actinomycetota
Pedococcus cremeus [FOHB]
189612
189686
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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