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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.423448 (21 seq.)
>W1710875576
LMOM01000087
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
146093
146167
+
Lys
TTT
[ENA]
¡û
>W131104598
APCS01000127
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
5568
5494
-
Lys
TTT
[ENA]
¡û
>C007957
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2037842
2037768
-
Lys
TTT
[Ensembl]
¡û
>WENV180232064
OBCO01000083
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
214486
214412
-
Lys
TTT
[ENA]
¢þ
>WENV180233267
OBCP01000272
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
56813
56739
-
Lys
TTT
[ENA]
¢þ
>WENV180569831
OCLR01000527
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
23017
22943
-
Lys
TTT
[ENA]
¢þ
>WENV180570768
OCLS01000530
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
23015
22941
-
Lys
TTT
[ENA]
¢þ
>WENV180571400
OCLT01000081
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
214486
214412
-
Lys
TTT
[ENA]
¢þ
>WENV180573650
OCLW01000081
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
5454
5528
+
Lys
TTT
[ENA]
¢þ
>WENV180639727
OCRL01000087
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
214486
214412
-
Lys
TTT
[ENA]
¢þ
>WENV180640651
OCRM01000081
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
214486
214412
-
Lys
TTT
[ENA]
¢þ
>W141154791
AXLL01000195
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
5486
5560
+
Lys
TTT
[ENA]
¡û
>C181196452
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
225168
225242
+
Lys
TTT
-
¡û
>W141561457
JHYL01000004
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
214526
214452
-
Lys
TTT
[ENA]
¡û
>W141702076
JMLF01000018
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
5603
5677
+
Lys
TTT
[ENA]
¡û
>C10105359
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2037842
2037768
-
Lys
TTT
[Ensembl]
¡û
>C11107286
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2037842
2037768
-
Lys
TTT
[Ensembl]
¡û
>C121002058
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
1054722
1054796
+
Lys
TTT
[Ensembl]
¡û
>C161082961
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
687842
687916
+
Lys
TTT
-
¡û
>W1610737922
LMOM01000087
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
146093
146167
+
Lys
TTT
[ENA]
¡û
>W1710542284
FNZA01000018
Deinococcota
Deinococcus reticulitermitis [FNZA]
13131
13205
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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