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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.424271 (97 seq.)
>W1711309904
MARF01000044
Bacillota
Clostridium perfringens [MARF]
21394
21320
-
Glu
TTC
[ENA]
¡û
>W1711309907
MARF01000044
Bacillota
Clostridium perfringens [MARF]
21142
21068
-
Glu
TTC
[ENA]
¡û
>W1711309910
MARF01000044
Bacillota
Clostridium perfringens [MARF]
20889
20815
-
Glu
TTC
[ENA]
¡û
>W1711309932
MARF01000077
Bacillota
Clostridium perfringens [MARF]
100049
99975
-
Glu
TTC
[ENA]
¡û
>W1711310231
MARJ01000094
Bacillota
Clostridium perfringens [MARJ]
44559
44485
-
Glu
TTC
[ENA]
¡û
>W1711310234
MARJ01000094
Bacillota
Clostridium perfringens [MARJ]
44307
44233
-
Glu
TTC
[ENA]
¡û
>W1711310237
MARJ01000094
Bacillota
Clostridium perfringens [MARJ]
44054
43980
-
Glu
TTC
[ENA]
¡û
>W1711310256
MARJ01000106
Bacillota
Clostridium perfringens [MARJ]
232
306
+
Glu
TTC
[ENA]
¡û
>W1711310483
MARM01000081
Bacillota
Clostridium perfringens [MARM]
31259
31185
-
Glu
TTC
[ENA]
¡û
>W1711310486
MARM01000081
Bacillota
Clostridium perfringens [MARM]
31007
30933
-
Glu
TTC
[ENA]
¡û
>W1711310489
MARM01000081
Bacillota
Clostridium perfringens [MARM]
30754
30680
-
Glu
TTC
[ENA]
¡û
>W1711310505
MARM01000093
Bacillota
Clostridium perfringens [MARM]
266772
266698
-
Glu
TTC
[ENA]
¡û
>W1711311046
MARU01000017
Bacillota
Clostridium perfringens [MARU]
4078
4152
+
Glu
TTC
[ENA]
¡û
>W1711311060
MARU01000044
Bacillota
Clostridium perfringens [MARU]
233
307
+
Glu
TTC
[ENA]
¡û
>W1711311100
MARU01000064
Bacillota
Clostridium perfringens [MARU]
59
133
+
Glu
TTC
[ENA]
¡û
>W1711311290
MARX01000027
Bacillota
Clostridium perfringens [MARX]
10341
10415
+
Glu
TTC
[ENA]
¡û
>W1711311293
MARX01000027
Bacillota
Clostridium perfringens [MARX]
10593
10667
+
Glu
TTC
[ENA]
¡û
>W1711311296
MARX01000027
Bacillota
Clostridium perfringens [MARX]
10846
10920
+
Glu
TTC
[ENA]
¡û
>W1711311300
MARX01000033
Bacillota
Clostridium perfringens [MARX]
55761
55687
-
Glu
TTC
[ENA]
¡û
>W1712040335
NFKH01000007
Bacillota
Clostridium perfringens [NFKH]
161044
160970
-
Glu
TTC
[ENA]
¡û
>W1712040360
NFKH01000021
Bacillota
Clostridium perfringens [NFKH]
48832
48758
-
Glu
TTC
[ENA]
¡û
>W1712040378
NFKH01000052
Bacillota
Clostridium perfringens [NFKH]
4147
4221
+
Glu
TTC
[ENA]
¡û
>C171020895
CP013101
Bacillota
Clostridium perfringens FORC_025 [CP013101]
701340
701414
+
Glu
TTC
-
¡û
>C171020897
CP013101
Bacillota
Clostridium perfringens FORC_025 [CP013101]
3303044
3302970
-
Glu
TTC
-
¡û
>C171020900
CP013101
Bacillota
Clostridium perfringens FORC_025 [CP013101]
3302792
3302718
-
Glu
TTC
-
¡û
>C171020903
CP013101
Bacillota
Clostridium perfringens FORC_025 [CP013101]
3302539
3302465
-
Glu
TTC
-
¡û
>WENV180168405
OAVR01000014
[OAVR] human gut metagenome; faeces
2
76
+
Glu
TTC
[ENA]
¢þ
>WENV180168444
OAVR01000087
[OAVR] human gut metagenome; faeces
126
200
+
Glu
TTC
[ENA]
¢þ
>WENV180168550
OAVR01000839
[OAVR] human gut metagenome; faeces
308
234
-
Glu
TTC
[ENA]
¢þ
>WENV180346673
OBLN01212969
[OBLN] sediment metagenome; sediment
221
295
+
Glu
TTC
[ENA]
¢þ
>WENV180407864
OBUR01005759
[OBUR] human gut metagenome; faeces
2
76
+
Glu
TTC
[ENA]
¢þ
>WENV180598706
OCPN01000032
[OCPN] human gut metagenome; faeces
62
136
+
Glu
TTC
[ENA]
¢þ
>WENV180598735
OCPN01000056
[OCPN] human gut metagenome; faeces
10690
10616
-
Glu
TTC
[ENA]
¢þ
>WENV180598738
OCPN01000056
[OCPN] human gut metagenome; faeces
10436
10362
-
Glu
TTC
[ENA]
¢þ
>WENV180629434
OCQP01094172
[OCQP] human gut metagenome; human gut
390
464
+
Glu
TTC
[ENA]
¢þ
>W141063923
APJS01000011
Bacillota
Clostridium tetanomorphum DSM 665 [APJS]
167
241
+
Glu
TTC
[ENA]
¡û
>W141063965
APJS01000073
Bacillota
Clostridium tetanomorphum DSM 665 [APJS]
14830
14904
+
Glu
TTC
[ENA]
¡û
>WENV180962058
ODUN01004972
[ODUN] human metagenome; G_DNA_Stool
2003
1929
-
Glu
TTC
[ENA]
¢þ
>W08001479
ABDV01000007
Bacillota
Clostridium perfringens B str. ATCC 3626 [ABDV]
156001
155930
-
Glu
TTC
[ENA]
¡û
>W08001536
ABDV01000035
Bacillota
Clostridium perfringens B str. ATCC 3626 [ABDV]
28672
28601
-
Glu
TTC
[ENA]
¡û
>WENV181471353
OGEW01001755
[OGEW] metagenome; Human gut stool
2874
2800
-
Glu
TTC
[ENA]
¢þ
>W141149986
AXAA01000015
Bacillota
Caloramator sp. ALD01 [AXAA]
39303
39229
-
Glu
TTC
[ENA]
¡û
>W141150007
AXAA01000054
Bacillota
Caloramator sp. ALD01 [AXAA]
114
188
+
Glu
TTC
[ENA]
¡û
>WENV181798435
OGRV01000250
[OGRV] human gut metagenome; fecal sample 3 from infant 4
61
135
+
Glu
TTC
[ENA]
¢þ
>WENV181805195
OGSH01001814
[OGSH] human gut metagenome; fecal sample 5 from infant 6
139
65
-
Glu
TTC
[ENA]
¢þ
>WENV181805200
OGSH01002049
[OGSH] human gut metagenome; fecal sample 5 from infant 6
1903
1829
-
Glu
TTC
[ENA]
¢þ
>WENV181805679
OGSJ01000237
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
322
396
+
Glu
TTC
[ENA]
¢þ
>WENV182478405
OIQN01002036
[OIQN] human gut metagenome; human gut
124
198
+
Glu
TTC
[ENA]
¢þ
>WENV182811424
OJXK01007161
[OJXK] human gut metagenome; human gut
487
561
+
Glu
TTC
[ENA]
¢þ
>WENV182813974
OJYG01001752
[OJYG] human gut metagenome; human gut
60
134
+
Glu
TTC
[ENA]
¢þ
>WENV182823941
OKBY01000135
[OKBY] human gut metagenome; human gut
5758
5832
+
Glu
TTC
[ENA]
¢þ
>WENV182963519
OKWQ01000925
[OKWQ] human gut metagenome; stool
83
157
+
Glu
TTC
[ENA]
¢þ
>WENV182963540
OKWQ01001433
[OKWQ] human gut metagenome; stool
4058
4132
+
Glu
TTC
[ENA]
¢þ
>WENV183148275
OLON01025589
[OLON] human gut metagenome; faeces
75
1
-
Glu
TTC
[ENA]
¢þ
>WENV183188703
OLPP01013438
[OLPP] human gut metagenome; faeces
284
210
-
Glu
TTC
[ENA]
¢þ
>WENV183233908
OLQV01005984
[OLQV] human gut metagenome; faeces
75
1
-
Glu
TTC
[ENA]
¢þ
>WENV183260906
OLRP01003971
[OLRP] human gut metagenome; faeces
75
1
-
Glu
TTC
[ENA]
¢þ
>WENV183284197
OLSD01007278
[OLSD] human gut metagenome; faeces
5118
5192
+
Glu
TTC
[ENA]
¢þ
>WENV170015659
AZII01001626
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
17
91
+
Glu
TTC
[ENA]
¢þ
>WENV170019222
BBPD01006342
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
18495
18569
+
Glu
TTC
[ENA]
¢þ
>WENV170020223
BBPE01004355
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
6226
6300
+
Glu
TTC
[ENA]
¢þ
>WENV170022051
BBPG01011486
[BBPG] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
257
183
-
Glu
TTC
[ENA]
¢þ
>WENV170675309
LCWZ01038713
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
33
107
+
Glu
TTC
[ENA]
¢þ
>WENV170675498
LCWZ01096023
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
13
87
+
Glu
TTC
[ENA]
¢þ
>WENV170688294
LFRM01238303
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
729
655
-
Glu
TTC
[ENA]
¢þ
>WENV170688297
LFRM01238303
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
451
377
-
Glu
TTC
[ENA]
¢þ
>WENV170716720
LSQX01009426
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
119
45
-
Glu
TTC
[ENA]
¢þ
>C181162241
CP028149
Bacillota
Clostridium perfringens JXJA17 [CP028149]
742551
742625
+
Glu
TTC
-
¡û
>C181162243
CP028149
Bacillota
Clostridium perfringens JXJA17 [CP028149]
3283049
3282975
-
Glu
TTC
-
¡û
>C181162246
CP028149
Bacillota
Clostridium perfringens JXJA17 [CP028149]
3282797
3282723
-
Glu
TTC
-
¡û
>C181162249
CP028149
Bacillota
Clostridium perfringens JXJA17 [CP028149]
3282544
3282470
-
Glu
TTC
-
¡û
>C181214862
LS483461
Bacillota
Clostridium perfringens NCTC2837 [LS483461]
744282
744356
+
Glu
TTC
-
¡û
>C181214863
LS483461
Bacillota
Clostridium perfringens NCTC2837 [LS483461]
3232730
3232656
-
Glu
TTC
-
¡û
>C181214866
LS483461
Bacillota
Clostridium perfringens NCTC2837 [LS483461]
3232478
3232404
-
Glu
TTC
-
¡û
>C181214869
LS483461
Bacillota
Clostridium perfringens NCTC2837 [LS483461]
3232226
3232152
-
Glu
TTC
-
¡û
>C191184243
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
159335
159408
+
Glu
CTC
-
¡û
>W141732454
JNKC01000004
Bacillota
Proteiniclasticum ruminis DSM 24773 [JNKC]
326090
326016
-
Glu
TTC
[ENA]
¡û
>W141732457
JNKC01000004
Bacillota
Proteiniclasticum ruminis DSM 24773 [JNKC]
325820
325746
-
Glu
TTC
[ENA]
¡û
>W1910213062
FMJL01000053
Bacillota
Clostridium sp. N3C [FMJL]
226
298
+
Glu
CTC
[ENA]
¡û
>W1911723880
QRHB01000006
Bacillota
Clostridium perfringens 79385-4 [QRHB]
66721
66647
-
Glu
TTC
[ENA]
¡û
>W1911723915
QRHB01000109
Bacillota
Clostridium perfringens 79385-4 [QRHB]
248
174
-
Glu
TTC
[ENA]
¡û
>W1810179347
PJSP01000021
Bacillota
Clostridium perfringens SAF-1 [PJSP]
153
227
+
Glu
TTC
[ENA]
¡û
>W1810179408
PJSP01000072
Bacillota
Clostridium perfringens SAF-1 [PJSP]
17130
17056
-
Glu
TTC
[ENA]
¡û
>W1810179411
PJSP01000072
Bacillota
Clostridium perfringens SAF-1 [PJSP]
16879
16805
-
Glu
TTC
[ENA]
¡û
>W1810179796
PJSV01000002
Bacillota
Clostridium perfringens NAG-NE31 [PJSV]
277
351
+
Glu
TTC
[ENA]
¡û
>W1810179798
PJSV01000004
Bacillota
Clostridium perfringens NAG-NE31 [PJSV]
50602
50676
+
Glu
TTC
[ENA]
¡û
>W1810179801
PJSV01000004
Bacillota
Clostridium perfringens NAG-NE31 [PJSV]
50854
50928
+
Glu
TTC
[ENA]
¡û
>W1810179804
PJSV01000004
Bacillota
Clostridium perfringens NAG-NE31 [PJSV]
51107
51181
+
Glu
TTC
[ENA]
¡û
>W1810180642
PJTF01000019
Bacillota
Clostridium perfringens 96-7415 [PJTF]
48784
48710
-
Glu
TTC
[ENA]
¡û
>W1810180658
PJTF01000045
Bacillota
Clostridium perfringens 96-7415 [PJTF]
283
209
-
Glu
TTC
[ENA]
¡û
>W1810180861
PJTI01000005
Bacillota
Clostridium perfringens UDE 95-1372 [PJTI]
4609
4683
+
Glu
TTC
[ENA]
¡û
>W1810180865
PJTI01000005
Bacillota
Clostridium perfringens UDE 95-1372 [PJTI]
5079
5153
+
Glu
TTC
[ENA]
¡û
>W1810180876
PJTI01000009
Bacillota
Clostridium perfringens UDE 95-1372 [PJTI]
277
351
+
Glu
TTC
[ENA]
¡û
>W1710518395
FNDZ01000003
Bacillota
Proteiniclasticum ruminis [FNDZ]
35710
35784
+
Glu
TTC
[ENA]
¡û
>W1710518398
FNDZ01000003
Bacillota
Proteiniclasticum ruminis [FNDZ]
35980
36054
+
Glu
TTC
[ENA]
¡û
>W1710563837
FOQA01000006
Bacillota
Tindallia magadiensis [FOQA]
242643
242569
-
Glu
TTC
[ENA]
¡û
>W1710570846
FOVK01000017
Bacillota
Proteiniclasticum ruminis [FOVK]
336
262
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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