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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.424557 (34 seq.)
>W1710864758
LMGD01000001
Alphaproteobacteria
Rhizobium sp. Root149 [LMGD]
712516
712589
+
Gln
CTG
[ENA]
¡û
>W1710882132
LMTO01000017
Alphaproteobacteria
Candidatus Liberibacter asiaticus [LMTO]
50478
50405
-
Gln
CTG
[ENA]
¡û
>W1710893498
LNEV01000006
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
44041
44114
+
Gln
CTG
[ENA]
¡û
>W1711315243
MAVS01000069
Alphaproteobacteria
Agrobacterium vitis [MAVS]
500167
500094
-
Gln
CTG
[ENA]
¡û
>W1711325968
MBEX01000072
Alphaproteobacteria
Agrobacterium vitis [MBEX]
200777
200704
-
Gln
CTG
[ENA]
¡û
>W1711489039
MKIM01000024
Alphaproteobacteria
Rhizobium oryziradicis [MKIM]
315540
315613
+
Gln
CTG
[ENA]
¡û
>W1711489098
MKIN01000018
Alphaproteobacteria
Allorhizobium taibaishanense [MKIN]
567
494
-
Gln
CTG
[ENA]
¡û
>W1711501095
MKRF01000017
Alphaproteobacteria
Rhizobium sp. 63-7 [MKRF]
3478
3405
-
Gln
CTG
[ENA]
¡û
>WENV181227986
OFDN01096664
[OFDN] hot springs metagenome; Water
133
206
+
Gln
CTG
[ENA]
¢þ
>WENV183738421
PJUD01198136
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
165
238
+
Gln
CTG
[ENA]
¢þ
>W141461598
JFGQ01000001
Alphaproteobacteria
Candidatus Liberibacter asiaticus [JFGQ]
205131
205204
+
Gln
CTG
[ENA]
¡û
>C181041722
CP019958
Alphaproteobacteria
Candidatus Liberibacter asiaticus JXGC [CP019958]
198895
198968
+
Gln
CTG
-
¡û
>C191072687
CP030827
Alphaproteobacteria
Neorhizobium sp. NCHU2750 [CP030827]
377088
377015
-
Gln
CTG
-
¡û
>W141699814
JMIL02000236
Alphaproteobacteria
Candidatus Liberibacter asiaticus [JMIL]
18298
18371
+
Gln
CTG
[ENA]
¡û
>W09107905
ABQW01000001
Alphaproteobacteria
Candidatus Liberibacter asiaticus asiaticus str. psy62 [ABQW]
56340
56267
-
Gln
CTG
[ENA]
¡û
>C09102634
CP001677
Alphaproteobacteria
Candidatus Liberibacter asiaticus str. psy62 [CP001677]
205134
205207
+
Gln
CTG
[Ensembl]
¡û
>C141002001
CP003789
Alphaproteobacteria
Liberibacter crescens BT-1 [CP003789]
1154250
1154323
+
Gln
CTG
[Ensembl]
¡û
>W1911495622
OBQD01000001
Alphaproteobacteria
Rhizobium subbaraonis JC85 [OBQD]
97569
97496
-
Gln
CTG
[ENA]
¡û
>W1911766447
QXDO01000001
Alphaproteobacteria
Candidatus Liberibacter asiaticus asiaticus YNJS7C [QXDO]
198914
198987
+
Gln
CTG
[ENA]
¡û
>W1810758727
QPIX01000003
Alphaproteobacteria
Ciceribacter lividus DSM 25528 [QPIX]
327222
327149
-
Gln
CTG
[ENA]
¡û
>C151002409
AP014595
Alphaproteobacteria
Candidatus Liberibacter asiaticus str. Ishi-1 [AP014595]
197330
197403
+
Gln
CTG
[Ensembl]
¡û
>C151101722
HG938355
Alphaproteobacteria
Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI HAMBI 1141 [HG938355]
373756
373683
-
Gln
CTG
[Ensembl]
¡û
>W1510053036
CCRK01000001
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRK]
449654
449581
-
Gln
CTG
[ENA]
¡û
>W1511478185
JWHA01000001
Alphaproteobacteria
Candidatus Liberibacter asiaticus asiaticus FL17 [JWHA]
205176
205249
+
Gln
CTG
[ENA]
¡û
>C161027943
CP010522
Alphaproteobacteria
Liberibacter crescens BT-0 [CP010522]
1207953
1208026
+
Gln
CTG
-
¡û
>C161028533
CP010804
Alphaproteobacteria
Candidatus Liberibacter asiaticus A4 [CP010804]
198911
198984
+
Gln
CTG
-
¡û
>W121044144
AHZC01000419
Alphaproteobacteria
Rhizobium sp. PDO1-076 [AHZC]
91204
91131
-
Gln
CTG
[ENA]
¡û
>C131011134
CP004005
Alphaproteobacteria
Candidatus Liberibacter asiaticus str. gxpsy [CP004005]
191675
191748
+
Gln
CTG
[Ensembl]
¡û
>W1610630558
LIIM01000001
Alphaproteobacteria
Candidatus Liberibacter asiaticus [LIIM]
195575
195648
+
Gln
CTG
[ENA]
¡û
>W1610727104
LMGD01000001
Alphaproteobacteria
Rhizobium sp. Root149 [LMGD]
712516
712589
+
Gln
CTG
[ENA]
¡û
>W1610744059
LMTO01000017
Alphaproteobacteria
Candidatus Liberibacter asiaticus [LMTO]
50478
50405
-
Gln
CTG
[ENA]
¡û
>W1610753764
LNEV01000006
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
44041
44114
+
Gln
CTG
[ENA]
¡û
>W1710556794
FOKM01000003
Alphaproteobacteria
Rhizobium sp. NFR07 [FOKM]
407543
407616
+
Gln
CTG
[ENA]
¡û
>W1710761697
LIIM01000001
Alphaproteobacteria
Candidatus Liberibacter asiaticus [LIIM]
195575
195648
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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