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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.426344 (22 seq.)
>W1710926866
LOES01000243
Bacillota
Clostridia bacterium BRH_c25 [LOES]
475
402
-
Gly
TCC
[ENA]
¡û
>W1711409466
MGOS01000083
Bacillota
Clostridiales bacterium GWB2_37_7 [MGOS]
78294
78221
-
Gly
TCC
[ENA]
¡û
>C000784
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
996643
996716
+
Gly
TCC
[Ensembl]
¡û
>C000816
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4453023
4452950
-
Gly
TCC
[Ensembl]
¡û
>C000844
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4444833
4444760
-
Gly
TCC
[Ensembl]
¡û
>C000850
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4437637
4437564
-
Gly
TCC
[Ensembl]
¡û
>C000866
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4436089
4436016
-
Gly
TCC
[Ensembl]
¡û
>w010473
AAKU01000254
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
840
770
-
Gly
TCC
[ENA]
¡û
>w010462
AAKU01000216
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
185
258
+
Gly
TCC
[ENA]
¡û
>w010460
AAKU01000209
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
2903
2976
+
Gly
TCC
[ENA]
¡û
>w010444
AAKU01000209
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1355
1428
+
Gly
TCC
[ENA]
¡û
>w010438
AAKU01000148
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
6660
6735
+
Gly
TCC
[ENA]
¡û
>w010407
AAKU01000062
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
13224
13154
-
Gly
TCC
[ENA]
¡û
>WENV170698086
LGVF01255299
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
3924
3997
+
Gly
TCC
[ENA]
¢þ
>W1910548234
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
175762
175689
-
Gly
TCC
[ENA]
¡û
>W1910548246
FZOJ01000018
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
39942
39869
-
Gly
TCC
[ENA]
¡û
>W1910548273
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
632
705
+
Gly
TCC
[ENA]
¡û
>W1810677403
QKMR01000005
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
187099
187172
+
Gly
TCC
[ENA]
¡û
>W1810677441
QKMR01000021
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
21159
21232
+
Gly
TCC
[ENA]
¡û
>W1511527514
JYHU01000002
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
299200
299127
-
Gly
TCC
[ENA]
¡û
>W1511527529
JYHU01000004
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
266728
266801
+
Gly
TCC
[ENA]
¡û
>W1610784408
LOES01000243
Bacillota
Clostridia bacterium BRH_c25 [LOES]
475
402
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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