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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.426362 (53 seq.)
>W1710881450
LMTB01000097
Actinomycetota
Dietzia timorensis [LMTB]
30692
30619
-
Gly
CCC
[ENA]
¡û
>W1711003313
LQGY01000055
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
90018
90089
+
Gly
CCC
[ENA]
¡û
>W1711050386
LRRM01000004
Actinomycetota
Nocardia brasiliensis [LRRM]
430161
430232
+
Gly
CCC
[ENA]
¡û
>W131099125
AOSR01000068
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
18709
18638
-
Gly
CCC
[ENA]
¡û
>W1711081648
LSSV01000082
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
142561
142634
+
Gly
CCC
[ENA]
¡û
>W1711082317
LSTT01000364
Actinomycetota
Dietzia cinnamea [LSTT]
329822
329895
+
Gly
CCC
[ENA]
¡û
>W131218483
ATXT01000016
Actinomycetota
Humibacter albus DSM 18994 [ATXT]
320591
320664
+
Gly
CCC
[ENA]
¡û
>W1711351231
MDCG01000210
Actinomycetota
Dietzia alimentaria [MDCG]
18984
18911
-
Gly
CCC
[ENA]
¡û
>W1711747317
MUKP01000014
Actinomycetota
Nocardia donostiensis [MUKP]
25470
25543
+
Gly
CCC
[ENA]
¡û
>W1711750396
MUMY01000004
Actinomycetota
Nocardia donostiensis [MUMY]
25494
25567
+
Gly
CCC
[ENA]
¡û
>C171044553
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
3162325
3162398
+
Gly
CCC
-
¡û
>C171072543
CP018082
Actinomycetota
Nocardia mangyaensis Y48 [CP018082]
6965123
6965196
+
Gly
CCC
-
¡û
>WENV180030447
FTJM01030103
[FTJM] metagenome; soil
132
203
+
Gly
CCC
[ENA]
¢þ
>WENV181170009
OEIV010019401
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1229
1302
+
Gly
CCC
[ENA]
¢þ
>W141231448
BAUA01000186
Actinomycetota
Nocardia brasiliensis IFM 10847 [BAUA]
726
655
-
Gly
CCC
[ENA]
¡û
>C181107056
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
3155629
3155700
+
Gly
CCC
-
¡û
>C181148301
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
813543
813616
+
Gly
CCC
-
¡û
>C191092339
CP032624
Actinomycetota
Gryllotalpicola protaetiae 2DFW10M-5 [CP032624]
1623811
1623884
+
Gly
CCC
-
¡û
>C191208349
LR134352
Actinomycetota
Nocardia asteroides NCTC11293 [LR134352]
438650
438721
+
Gly
CCC
-
¡û
>W141769060
JOFP01000002
Actinomycetota
Pilimelia anulata [JOFP]
1327139
1327212
+
Gly
CCC
[ENA]
¡û
>W1911493028
OBEG01000004
Actinomycetota
Nocardia amikacinitolerans DSM 45537 [OBEG]
701323
701251
-
Gly
CCC
[ENA]
¡û
>W1911573008
PDDW01000001
Actinomycetota
Nocardia sp. FDAARGOS_372 [PDDW]
4459207
4459280
+
Gly
CCC
[ENA]
¡û
>W1810580858
QETM01000008
Actinomycetota
Dietzia maris AMT [QETM]
38368
38441
+
Gly
CCC
[ENA]
¡û
>W11139547
AEKG01000406
Actinomycetota
Dietzia cinnamea P4 [AEKG]
11544
11471
-
Gly
CCC
[ENA]
¡û
>W121055511
AIHV01000003
Actinomycetota
Nocardia brasiliensis ATCC 700358 [AIHV]
357139
357068
-
Gly
CCC
[ENA]
¡û
>W121124860
BAFO01000034
Actinomycetota
Nocardia asteroides NBRC 15531 [BAFO]
47416
47489
+
Gly
CCC
[ENA]
¡û
>W121125726
BAGF01000084
Actinomycetota
Nocardia pneumoniae NBRC 100136 [BAGF]
31977
32050
+
Gly
CCC
[ENA]
¡û
>W121125778
BAGG01000123
Actinomycetota
Nocardia takedensis NBRC 100417 [BAGG]
56435
56509
+
Gly
CCC
[ENA]
¡û
>W121126138
BAGN01000203
Actinomycetota
Nocardia vinacea NBRC 16497 [BAGN]
6435
6506
+
Gly
CCC
[ENA]
¡û
>W1610050671
BBGC01000158
Actinomycetota
Agromyces mediolanus JCM 9631 [BBGC]
628
701
+
Gly
CCC
[ENA]
¡û
>W1610069065
BCRU01000025
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 = NBRC 103563 [BCRU]
15361
15434
+
Gly
CCC
[ENA]
¡û
>W1610078592
BDAZ01000065
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
40018
40091
+
Gly
CCC
[ENA]
¡û
>W1610078686
BDBB01000040
Actinomycetota
Nocardia arthritidis NBRC 100137 [BDBB]
38302
38229
-
Gly
CCC
[ENA]
¡û
>W1610079080
BDBJ01000092
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
23708
23781
+
Gly
CCC
[ENA]
¡û
>W1610079246
BDBM01000023
Actinomycetota
Nocardia gamkensis NBRC 108242 [BDBM]
15624
15697
+
Gly
CCC
[ENA]
¡û
>W1610080486
BDCK01000002
Actinomycetota
Nocardia niwae NBRC 108934 = DSM 45340 [BDCK]
126265
126338
+
Gly
CCC
[ENA]
¡û
>W1610163642
FAUH01000011
Actinomycetota
Corynebacterium variabile [FAUH]
16844
16915
+
Gly
CCC
[ENA]
¡û
>C131008851
CP003876
Actinomycetota
Nocardia brasiliensis ATCC 700358 HUJEG-1 [CP003876]
9067008
9067079
+
Gly
CCC
[Ensembl]
¡û
>W1610743796
LMTB01000097
Actinomycetota
Dietzia timorensis [LMTB]
30692
30619
-
Gly
CCC
[ENA]
¡û
>W1610853878
LQGY01000055
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
90018
90089
+
Gly
CCC
[ENA]
¡û
>W1610891515
LRRM01000004
Actinomycetota
Nocardia brasiliensis [LRRM]
430161
430232
+
Gly
CCC
[ENA]
¡û
>W1610920483
LSSV01000082
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
142561
142634
+
Gly
CCC
[ENA]
¡û
>W1610921102
LSTT01000364
Actinomycetota
Dietzia cinnamea [LSTT]
329822
329895
+
Gly
CCC
[ENA]
¡û
>W1710047070
BBGC01000158
Actinomycetota
Agromyces mediolanus JCM 9631 [BBGC]
628
701
+
Gly
CCC
[ENA]
¡û
>W1710066438
BCRU01000025
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 = NBRC 103563 [BCRU]
15361
15434
+
Gly
CCC
[ENA]
¡û
>W1710077151
BDAZ01000065
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
40018
40091
+
Gly
CCC
[ENA]
¡û
>W1710077245
BDBB01000040
Actinomycetota
Nocardia arthritidis NBRC 100137 [BDBB]
38302
38229
-
Gly
CCC
[ENA]
¡û
>W1710077639
BDBJ01000092
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
23708
23781
+
Gly
CCC
[ENA]
¡û
>W1710077805
BDBM01000023
Actinomycetota
Nocardia gamkensis NBRC 108242 [BDBM]
15624
15697
+
Gly
CCC
[ENA]
¡û
>W1710079045
BDCK01000002
Actinomycetota
Nocardia niwae NBRC 108934 = DSM 45340 [BDCK]
126265
126338
+
Gly
CCC
[ENA]
¡û
>W1710165309
FAUH01000011
Actinomycetota
Corynebacterium variabile [FAUH]
16844
16915
+
Gly
CCC
[ENA]
¡û
>W1710568851
FOTX01000001
Actinomycetota
Nocardia asteroides [FOTX]
692970
692897
-
Gly
CCC
[ENA]
¡û
>W1710599652
FTOW01000003
Actinomycetota
Nocardia farcinica [FTOW]
585994
585921
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK