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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.426379 (79 seq.)
>W131044221
AMQK01000008
Alphaproteobacteria
Bartonella bacilliformis INS [AMQK]
36535
36608
+
Cys
GCA
[ENA]
¡û
>W131044222
AMQK01000008
Alphaproteobacteria
Bartonella bacilliformis INS [AMQK]
64288
64361
+
Cys
GCA
[ENA]
¡û
>W1711019462
LQXX01000010
Alphaproteobacteria
Bartonella bacilliformis [LQXX]
891
964
+
Cys
GCA
[ENA]
¡û
>W131162083
AQYH01000003
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
93438
93365
-
Cys
GCA
[ENA]
¡û
>W1711229764
LXYS01000002
Alphaproteobacteria
Bartonella apis [LXYS]
482628
482701
+
Cys
GCA
[ENA]
¡û
>W1711229821
LXYT01000001
Alphaproteobacteria
Bartonella apis [LXYT]
18161
18088
-
Cys
GCA
[ENA]
¡û
>W1711229868
LXYU01000003
Alphaproteobacteria
Bartonella apis [LXYU]
495337
495410
+
Cys
GCA
[ENA]
¡û
>W1711385415
MEEE01000224
Alphaproteobacteria
Mesorhizobium sp. SCN 65-12 [MEEE]
3047
2974
-
Cys
GCA
[ENA]
¡û
>W1711738589
MUBG01000001
Alphaproteobacteria
Bartonella sp. WD12.1 [MUBG]
916314
916241
-
Cys
GCA
[ENA]
¡û
>W1711766181
MUYE01000001
Alphaproteobacteria
Bartonella sp. AR 15-3 [MUYE]
423988
424061
+
Cys
GCA
[ENA]
¡û
>W1711766842
MUYW01000116
Alphaproteobacteria
Bartonella taylorii [MUYW]
3207
3134
-
Cys
GCA
[ENA]
¡û
>C171040330
CP015625
Alphaproteobacteria
Bartonella choladocola BBC0122 [CP015625]
1632280
1632207
-
Cys
GCA
-
¡û
>C171041716
CP015820
Alphaproteobacteria
Bartonella apihabitans BBC0178 [CP015820]
1587336
1587263
-
Cys
GCA
-
¡û
>C171041762
CP015821
Alphaproteobacteria
Bartonella apihabitans BBC0244 [CP015821]
1610510
1610437
-
Cys
GCA
-
¡û
>C171099676
CP019780
Alphaproteobacteria
Bartonella sp. A1379B [CP019780]
388226
388299
+
Cys
GCA
-
¡û
>C171099745
CP019781
Alphaproteobacteria
Bartonella sp. WD16.2 [CP019781]
957484
957411
-
Cys
GCA
-
¡û
>C171099758
CP019786
Alphaproteobacteria
Bartonella sp. Raccoon60 [CP019786]
443201
443274
+
Cys
GCA
-
¡û
>C171099824
CP019787
Alphaproteobacteria
Bartonella sp. JB15 [CP019787]
880215
880142
-
Cys
GCA
-
¡û
>C171099864
CP019788
Alphaproteobacteria
Bartonella sp. JB63 [CP019788]
880262
880189
-
Cys
GCA
-
¡û
>C002005
CP000524
Alphaproteobacteria
Bartonella bacilliformis KC583 KC583; ATCC 35685 [CP000524]
668105
668178
+
Cys
GCA
[Ensembl]
¡û
>C002006
CP000524
Alphaproteobacteria
Bartonella bacilliformis KC583 KC583; ATCC 35685 [CP000524]
695858
695931
+
Cys
GCA
[Ensembl]
¡û
>C004014
BX897700
Alphaproteobacteria
Bartonella quintana str. Toulouse [BX897700]
983061
982988
-
Cys
GCA
[Ensembl]
¡û
>W141006722
AGWA01000006
Alphaproteobacteria
Bartonella bovis Apr-91 [AGWA]
691999
691926
-
Cys
GCA
[ENA]
¡û
>W141006771
AGWB01000003
Alphaproteobacteria
Bartonella bovis m02 [AGWB]
737955
737882
-
Cys
GCA
[ENA]
¡û
>W141006803
AGWC01000004
Alphaproteobacteria
Bartonella schoenbuchensis m07a [AGWC]
698518
698445
-
Cys
GCA
[ENA]
¡û
>W141006840
AGWD01000010
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Tweed [AGWD]
266062
266135
+
Cys
GCA
[ENA]
¡û
>W141009655
AHPC01000001
Alphaproteobacteria
Bartonella quintana JK 67 [AHPC]
359006
359079
+
Cys
GCA
[ENA]
¡û
>W141009724
AHPD01000006
Alphaproteobacteria
Bartonella quintana JK 68 [AHPD]
55796
55723
-
Cys
GCA
[ENA]
¡û
>W141009781
AHPE01000021
Alphaproteobacteria
Bartonella quintana JK 56 [AHPE]
94889
94816
-
Cys
GCA
[ENA]
¡û
>W141009799
AHPF01000011
Alphaproteobacteria
Bartonella quintana JK 63 [AHPF]
358992
359065
+
Cys
GCA
[ENA]
¡û
>W141038087
ALVG01000042
Alphaproteobacteria
Bartonella birtlesii E11 [ALVG]
4606
4679
+
Cys
GCA
[ENA]
¡û
>W141038125
ALVH01000043
Alphaproteobacteria
Bartonella birtlesii E4 [ALVH]
4607
4680
+
Cys
GCA
[ENA]
¡û
>W141071212
ASIT01000010
Alphaproteobacteria
Bartonella bacilliformis CUSCO5 [ASIT]
204569
204496
-
Cys
GCA
[ENA]
¡û
>W141071242
ASIU01000007
Alphaproteobacteria
Bartonella bacilliformis Cond044 [ASIU]
415884
415957
+
Cys
GCA
[ENA]
¡û
>W141071286
ASIV01000004
Alphaproteobacteria
Bartonella bacilliformis Ver097 [ASIV]
358732
358805
+
Cys
GCA
[ENA]
¡û
>W141071290
ASIV01000005
Alphaproteobacteria
Bartonella bacilliformis Ver097 [ASIV]
2907
2980
+
Cys
GCA
[ENA]
¡û
>W141071329
ASIW01000008
Alphaproteobacteria
Bartonella bacilliformis Peru38 [ASIW]
2357
2430
+
Cys
GCA
[ENA]
¡û
>W141071370
ASIX01000008
Alphaproteobacteria
Bartonella bacilliformis VAB9028 [ASIX]
2454
2527
+
Cys
GCA
[ENA]
¡û
>W141071406
ASIY01000007
Alphaproteobacteria
Bartonella bacilliformis Ver075 [ASIY]
414200
414273
+
Cys
GCA
[ENA]
¡û
>W141071449
ASIZ01000008
Alphaproteobacteria
Bartonella bacilliformis CAR600-02 [ASIZ]
362565
362638
+
Cys
GCA
[ENA]
¡û
>W141222616
AZZV01000001
Alphaproteobacteria
Bartonella quintana BQ2-D70 [AZZV]
232559
232486
-
Cys
GCA
[ENA]
¡û
>W141222699
AZZX01000009
Alphaproteobacteria
Bartonella quintana JK 73 [AZZX]
358380
358453
+
Cys
GCA
[ENA]
¡û
>W141222784
AZZZ01000008
Alphaproteobacteria
Bartonella quintana JK 7 [AZZZ]
357850
357923
+
Cys
GCA
[ENA]
¡û
>W141245854
CALU01000008
Alphaproteobacteria
Bartonella florencae R4(2010) [CALU]
14344
14271
-
Cys
GCA
[ENA]
¡û
>W141245893
CALV01000041
Alphaproteobacteria
Bartonella senegalensis OS02 [CALV]
7424
7497
+
Cys
GCA
[ENA]
¡û
>W141245917
CALW02000012
Alphaproteobacteria
Bartonella rattaustraliani AUST/NH4 [CALW]
24192
24265
+
Cys
GCA
[ENA]
¡û
>C08002183
AM260525
Alphaproteobacteria
Bartonella tribocorum CIP 105476 type strain:506 [AM260525]
1624918
1624848
-
Cys
GCA
[Ensembl]
¡û
>W141262290
CCBL010000007
Alphaproteobacteria
Bartonella doshiae [CCBL]
16407
16334
-
Cys
GCA
[ENA]
¡û
>W141275409
JACX01000020
Alphaproteobacteria
Bartonella grahamii ATCC 700132 [JACX]
16925
16852
-
Cys
GCA
[ENA]
¡û
>W141275460
JACY01000025
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii ATCC 51672 [JACY]
580
653
+
Cys
GCA
[ENA]
¡û
>W141275621
JADC01000012
Alphaproteobacteria
Bartonella clarridgeiae ATCC 51734 [JADC]
15382
15309
-
Cys
GCA
[ENA]
¡û
>WENV183741702
PJUG01001796
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
1830
1757
-
Cys
GCA
[ENA]
¢þ
>WENV170649252
JRHI01013563
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
391
464
+
Cys
GCA
[ENA]
¢þ
>C181037909
CP019489
Alphaproteobacteria
Bartonella sp. 1-1C [CP019489]
451186
451259
+
Cys
GCA
-
¡û
>C191214165
LR134527
Alphaproteobacteria
Bartonella elizabethae NCTC12898 [LR134527]
1103282
1103209
-
Cys
GCA
-
¡û
>C191214268
LR134529
Alphaproteobacteria
Bartonella vinsonii NCTC12905 [LR134529]
1302558
1302485
-
Cys
GCA
-
¡û
>W141554771
JHPQ01000003
Alphaproteobacteria
Bartonella bacilliformis str. Heidi Mejia [JHPQ]
219765
219692
-
Cys
GCA
[ENA]
¡û
>W141554812
JHPR01000004
Alphaproteobacteria
Bartonella bacilliformis Peru-18 [JHPR]
564547
564474
-
Cys
GCA
[ENA]
¡û
>W09104809
AANF01000001
Alphaproteobacteria
Bartonella bacilliformis KC583 [AANF]
1317
1390
+
Cys
GCA
[ENA]
¡û
>C09102311
CP001562
Alphaproteobacteria
Bartonella grahamii as4aup [CP001562]
1501723
1501650
-
Cys
GCA
[Ensembl]
¡û
>W1910828865
MWVG01000013
Alphaproteobacteria
Bartonella bovis BbUM [MWVG]
14907
14834
-
Cys
GCA
[ENA]
¡û
>W1910954278
NJPP01000036
Alphaproteobacteria
Bartonella tribocorum C635 [NJPP]
1373
1446
+
Cys
GCA
[ENA]
¡û
>W1810889119
QURN01000008
Alphaproteobacteria
Mesorhizobium denitrificans LA-28 [QURN]
202365
202292
-
Cys
GCA
[ENA]
¡û
>C151067970
CP010401
Alphaproteobacteria
Bartonella ancashensis 20.00 [CP010401]
903814
903887
+
Cys
GCA
-
¡û
>C151102069
HG969192
Alphaproteobacteria
Bartonella tribocorum BM1374166 [HG969192]
1625645
1625572
-
Cys
GCA
[Ensembl]
¡û
>C11102684
FN645454
Alphaproteobacteria
Bartonella clarridgeiae 73 [FN645454]
1045948
1045875
-
Cys
GCA
[Ensembl]
¡û
>W121059056
AILT01000012
Alphaproteobacteria
Bartonella sp. DB5-6 [AILT]
46938
47011
+
Cys
GCA
[ENA]
¡û
>W121059128
AILU01000051
Alphaproteobacteria
Bartonella washoeensis Sb944nv [AILU]
134862
134789
-
Cys
GCA
[ENA]
¡û
>W121059175
AILW01000002
Alphaproteobacteria
Bartonella elizabethae Re6043vi [AILW]
133974
134047
+
Cys
GCA
[ENA]
¡û
>W121059216
AILX01000005
Alphaproteobacteria
Bartonella washoeensis 085-0475 [AILX]
246466
246539
+
Cys
GCA
[ENA]
¡û
>W121059295
AILY01000054
Alphaproteobacteria
Bartonella rattimassiliensis 15908 [AILY]
50601
50528
-
Cys
GCA
[ENA]
¡û
>W121059297
AILZ01000002
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis OK-94-513 [AILZ]
35483
35556
+
Cys
GCA
[ENA]
¡û
>W121059348
AIMA01000013
Alphaproteobacteria
Bartonella melophagi K-2C [AIMA]
21168
21241
+
Cys
GCA
[ENA]
¡û
>W121059408
AIMB01000008
Alphaproteobacteria
Bartonella tamiae Th239 [AIMB]
425094
425021
-
Cys
GCA
[ENA]
¡û
>W121059430
AIMC01000009
Alphaproteobacteria
Bartonella birtlesii LL-WM9 [AIMC]
4868
4941
+
Cys
GCA
[ENA]
¡û
>W121059570
AIMF01000017
Alphaproteobacteria
Bartonella elizabethae F9251 [AIMF]
129493
129566
+
Cys
GCA
[ENA]
¡û
>W1610867750
LQXX01000010
Alphaproteobacteria
Bartonella bacilliformis [LQXX]
891
964
+
Cys
GCA
[ENA]
¡û
>W1710583194
FQUP01000003
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
471327
471400
+
Cys
GCA
[ENA]
¡û
>W1710721096
LFMF01000004
Alphaproteobacteria
Bartonella elizabethae [LFMF]
128967
129040
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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