This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.426787 (53 seq.)
>W1710943668
LOPY01000007
Gammaproteobacteria
Pseudoalteromonas sp. XI10 [LOPY]
2901
2828
-
Cys
GCA
[ENA]
¡û
>W1710943677
LOPY01000008
Gammaproteobacteria
Pseudoalteromonas sp. XI10 [LOPY]
362
289
-
Cys
GCA
[ENA]
¡û
>W131179527
ARML01000107
Gammaproteobacteria
Psychromonas ossibalaenae ATCC BAA-1528 [ARML]
4310
4383
+
Cys
GCA
[ENA]
¡û
>W131179530
ARML01000107
Gammaproteobacteria
Psychromonas ossibalaenae ATCC BAA-1528 [ARML]
4742
4815
+
Cys
GCA
[ENA]
¡û
>W1711175965
LWFC01000755
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LWFC]
1758
1685
-
Cys
GCA
[ENA]
¡û
>W1711175970
LWFC01000755
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LWFC]
1104
1031
-
Cys
GCA
[ENA]
¡û
>W131214934
ATUO01000222
Gammaproteobacteria
Psychromonas hadalis ATCC BAA-638 [ATUO]
244
171
-
Cys
GCA
[ENA]
¡û
>W131221484
AUAM01000135
Gammaproteobacteria
Psychromonas aquimarina ATCC BAA-1526 [AUAM]
808
735
-
Cys
GCA
[ENA]
¡û
>W131221487
AUAM01000135
Gammaproteobacteria
Psychromonas aquimarina ATCC BAA-1526 [AUAM]
285
212
-
Cys
GCA
[ENA]
¡û
>C016537
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
1488812
1488885
+
Cys
GCA
[Ensembl]
¡û
>w015548
AAPG01000061
Gammaproteobacteria
Psychromonas sp. CNPT3 [AAPG]
6762
6835
+
Cys
GCA
[ENA]
¡û
>W141252218
CBRF010000118
Gammaproteobacteria
Psychromonas sp. SP041 [CBRF]
11028
10955
-
Cys
GCA
[ENA]
¡û
>WENV170264300
CERD01023015
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3
76
+
Cys
GCA
[ENA]
¢þ
>WENV170457750
CEVA01509358
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2394
2321
-
Cys
GCA
[ENA]
¢þ
>C181053457
CP021646
Gammaproteobacteria
Pseudoalteromonas piscicida DE2-B [CP021646, CP021647]
2110382
2110309
-
Cys
GCA
-
¡û
>C181053462
CP021646
Gammaproteobacteria
Pseudoalteromonas piscicida DE2-B [CP021646, CP021647]
2109814
2109741
-
Cys
GCA
-
¡û
>C181067297
CP022522
Gammaproteobacteria
Pseudoalteromonas sp. NC201 [CP022522]
1660822
1660895
+
Cys
GCA
-
¡û
>C181067302
CP022522
Gammaproteobacteria
Pseudoalteromonas sp. NC201 [CP022522]
1661390
1661463
+
Cys
GCA
-
¡û
>W09105759
AAQS01000001
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
635875
635802
-
Cys
GCA
[ENA]
¡û
>W1910976835
NKHF01000060
Gammaproteobacteria
Pseudoalteromonas piscicida 36Y_RITHPW [NKHF]
103
30
-
Cys
GCA
[ENA]
¡û
>W1910976860
NKHF01000184
Gammaproteobacteria
Pseudoalteromonas piscicida 36Y_RITHPW [NKHF]
220
293
+
Cys
GCA
[ENA]
¡û
>W1911239190
NSDG01000032
Gammaproteobacteria
Pseudoalteromonas sp. HM-SA03 [NSDG]
1206
1133
-
Cys
GCA
[ENA]
¡û
>W1911239193
NSDG01000032
Gammaproteobacteria
Pseudoalteromonas sp. HM-SA03 [NSDG]
652
579
-
Cys
GCA
[ENA]
¡û
>W1810154471
PIZM01000002
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
292429
292356
-
Cys
GCA
[ENA]
¡û
>W1810156967
PJBP01000129
Gammaproteobacteria
Psychromonas sp. MB-3u-54 [PJBP]
9020
9093
+
Cys
GCA
[ENA]
¡û
>W1810157508
PJBZ01000115
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
8433
8360
-
Cys
GCA
[ENA]
¡û
>W1810157513
PJBZ01000115
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
7679
7606
-
Cys
GCA
[ENA]
¡û
>W1810724831
QOCB01000089
Gammaproteobacteria
Psychromonas sp. B3M02 [QOCB]
3876
3949
+
Cys
GCA
[ENA]
¡û
>C151061291
CP009888
Gammaproteobacteria
Pseudoalteromonas piratica OCN003 [CP009888, CP009889]
2475080
2475007
-
Cys
GCA
[Ensembl]
¡û
>C151061296
CP009888
Gammaproteobacteria
Pseudoalteromonas piratica OCN003 [CP009888, CP009889]
2474540
2474467
-
Cys
GCA
[Ensembl]
¡û
>W1511479367
JWIC01000004
Gammaproteobacteria
Pseudoalteromonas luteoviolacea HI1 [JWIC]
920952
921025
+
Cys
GCA
[ENA]
¡û
>W1511479372
JWIC01000004
Gammaproteobacteria
Pseudoalteromonas luteoviolacea HI1 [JWIC]
921466
921539
+
Cys
GCA
[ENA]
¡û
>W1511518153
JXXX01000009
Gammaproteobacteria
Pseudoalteromonas piscicida S2724 [JXXX]
1375
1302
-
Cys
GCA
[ENA]
¡û
>W1511518158
JXXX01000009
Gammaproteobacteria
Pseudoalteromonas piscicida S2724 [JXXX]
807
734
-
Cys
GCA
[ENA]
¡û
>W1511518390
JXYA01000033
Gammaproteobacteria
Pseudoalteromonas rubra S2471 [JXYA]
126
53
-
Cys
GCA
[ENA]
¡û
>W1511518401
JXYA01000044
Gammaproteobacteria
Pseudoalteromonas rubra S2471 [JXYA]
382
455
+
Cys
GCA
[ENA]
¡û
>W121025276
AHCD01000012
Gammaproteobacteria
Pseudoalteromonas rubra ATCC 29570 [AHCD]
111552
111625
+
Cys
GCA
[ENA]
¡û
>W121025281
AHCD01000012
Gammaproteobacteria
Pseudoalteromonas rubra ATCC 29570 [AHCD]
112326
112399
+
Cys
GCA
[ENA]
¡û
>W121064743
AJMP01000029
Gammaproteobacteria
Pseudoalteromonas flavipulchra JG1 [AJMP]
151105
151178
+
Cys
GCA
[ENA]
¡û
>W121064748
AJMP01000029
Gammaproteobacteria
Pseudoalteromonas flavipulchra JG1 [AJMP]
151673
151746
+
Cys
GCA
[ENA]
¡û
>W1610025038
AUXS01000075
Gammaproteobacteria
Pseudoalteromonas luteoviolacea NCIMB 1944 [AUXS]
487552
487625
+
Cys
GCA
[ENA]
¡û
>W1610025043
AUXS01000075
Gammaproteobacteria
Pseudoalteromonas luteoviolacea NCIMB 1944 [AUXS]
488064
488137
+
Cys
GCA
[ENA]
¡û
>W1610025427
AUXX01000016
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4060-1 [AUXX]
392845
392918
+
Cys
GCA
[ENA]
¡û
>W1610025432
AUXX01000016
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4060-1 [AUXX]
393361
393434
+
Cys
GCA
[ENA]
¡û
>W1610025682
AUYA01000002
Gammaproteobacteria
Pseudoalteromonas luteoviolacea CPMOR-2 [AUYA]
25954
26027
+
Cys
GCA
[ENA]
¡û
>W1610025687
AUYA01000002
Gammaproteobacteria
Pseudoalteromonas luteoviolacea CPMOR-2 [AUYA]
26469
26542
+
Cys
GCA
[ENA]
¡û
>W1610025967
AUYC01000066
Gammaproteobacteria
Pseudoalteromonas luteoviolacea CPMOR-1 [AUYC]
125
52
-
Cys
GCA
[ENA]
¡û
>W1610799968
LOPY01000007
Gammaproteobacteria
Pseudoalteromonas sp. XI10 [LOPY]
2901
2828
-
Cys
GCA
[ENA]
¡û
>W1610799977
LOPY01000008
Gammaproteobacteria
Pseudoalteromonas sp. XI10 [LOPY]
362
289
-
Cys
GCA
[ENA]
¡û
>W1610984278
LWFC01000755
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LWFC]
1758
1685
-
Cys
GCA
[ENA]
¡û
>W1610984283
LWFC01000755
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LWFC]
1104
1031
-
Cys
GCA
[ENA]
¡û
>W1710021669
AUXX01000016
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4060-1 [AUXX]
392845
392918
+
Cys
GCA
[ENA]
¡û
>W1710021674
AUXX01000016
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4060-1 [AUXX]
393361
393434
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK