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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.42683 (62 seq.)
>W1711010294
LQRE01000113
Bacillota
Streptococcus sp. DD10 [LQRE]
24128
24043
-
Leu
AAG
[ENA]
¡û
>W1711010413
LQRH01000054
Bacillota
Streptococcus sp. DD13 [LQRH]
17006
17091
+
Leu
AAG
[ENA]
¡û
>W1711078633
LSNB01000019
Bacillota
Streptococcus iniae [LSNB]
27593
27505
-
Leu
AAG
[ENA]
¡û
>C171070414
CP017952
Bacillota
Streptococcus iniae 89353 [CP017952]
400180
400268
+
Leu
AAG
-
¡û
>W131067539
ANQC01000103
Bacillota
Streptococcus agalactiae LMG 14747 [ANQC]
1862
1777
-
Leu
AAG
[ENA]
¡û
>W131087584
AOCT02000013
Bacillota
Streptococcus iniae IUSA1 [AOCT]
27394
27306
-
Leu
AAG
[ENA]
¡û
>W131159534
AQVD01000005
Bacillota
Streptococcus ferus DSM 20646 [AQVD]
36153
36068
-
Leu
AAG
[ENA]
¡û
>W131161836
AQYB01000031
Bacillota
Streptococcus minor DSM 17118 [AQYB]
36214
36302
+
Leu
AAG
[ENA]
¡û
>W141008886
AHAA01000009
Bacillota
Streptococcus urinalis FB127-CNA-2 [AHAA]
28660
28745
+
Leu
AAG
[ENA]
¡û
>WENV183211549
OLQC01104056
[OLQC] human gut metagenome; faeces
101
16
-
Leu
AAG
[ENA]
¢þ
>C181106412
CP024843
Bacillota
Streptococcus iniae FP5228 [CP024843]
1000897
1000982
+
Leu
AAG
-
¡û
>C181207404
LS483343
Bacillota
Streptococcus ferus NCTC12278 [LS483343]
233335
233420
+
Leu
AAG
-
¡û
>C191088993
CP032401
Bacillota
Streptococcus iniae GX005 [CP032401]
1551855
1551940
+
Leu
AAG
-
¡û
>C191206640
LR134323
Bacillota
Streptococcus urinalis NCTC13766 [LR134323]
1677606
1677521
-
Leu
AAG
-
¡û
>W1911690501
QLPP01000018
Bacillota
Streptococcus iniae QMA0493 [QLPP]
15287
15372
+
Leu
AAG
[ENA]
¡û
>W1911690578
QLPR01000018
Bacillota
Streptococcus iniae QMA0491 [QLPR]
15286
15371
+
Leu
AAG
[ENA]
¡û
>W1911690621
QLPS01000018
Bacillota
Streptococcus iniae QMA0490 [QLPS]
15287
15372
+
Leu
AAG
[ENA]
¡û
>W1911690655
QLPT01000020
Bacillota
Streptococcus iniae QMA0468 [QLPT]
15023
15108
+
Leu
AAG
[ENA]
¡û
>W1911690695
QLPU01000018
Bacillota
Streptococcus iniae QMA0467 [QLPU]
15445
15530
+
Leu
AAG
[ENA]
¡û
>W1911690745
QLPV01000070
Bacillota
Streptococcus iniae QMA0466 [QLPV]
1576
1491
-
Leu
AAG
[ENA]
¡û
>W1911690773
QLPW01000019
Bacillota
Streptococcus iniae QMA0463 [QLPW]
15286
15371
+
Leu
AAG
[ENA]
¡û
>W1911690813
QLPX01000021
Bacillota
Streptococcus iniae QMA0462 [QLPX]
15286
15371
+
Leu
AAG
[ENA]
¡û
>W1911691010
QLQC01000025
Bacillota
Streptococcus iniae QMA0446 [QLQC]
150
235
+
Leu
AAG
[ENA]
¡û
>W1911691058
QLQD01000022
Bacillota
Streptococcus iniae QMA0445 [QLQD]
150
235
+
Leu
AAG
[ENA]
¡û
>W1911691100
QLQE01000022
Bacillota
Streptococcus iniae QMA0374 [QLQE]
15029
15114
+
Leu
AAG
[ENA]
¡û
>W1911691139
QLQF01000023
Bacillota
Streptococcus iniae QMA0373 [QLQF]
15029
15114
+
Leu
AAG
[ENA]
¡û
>W1911691336
QLQK01000017
Bacillota
Streptococcus iniae QMA0252 [QLQK]
7462
7547
+
Leu
AAG
[ENA]
¡û
>W1911691375
QLQL01000017
Bacillota
Streptococcus iniae QMA0251 [QLQL]
7462
7547
+
Leu
AAG
[ENA]
¡û
>W1911691449
QLQN01000024
Bacillota
Streptococcus iniae QMA0249 [QLQN]
9588
9673
+
Leu
AAG
[ENA]
¡û
>W1911691527
QLQP01000020
Bacillota
Streptococcus iniae QMA0246 [QLQP]
7462
7547
+
Leu
AAG
[ENA]
¡û
>W1911691911
QLQZ01000021
Bacillota
Streptococcus iniae QMA0216 [QLQZ]
15287
15372
+
Leu
AAG
[ENA]
¡û
>W1911691946
QLRA01000019
Bacillota
Streptococcus iniae QMA0207 [QLRA]
152
237
+
Leu
AAG
[ENA]
¡û
>W1911692036
QLRC01000020
Bacillota
Streptococcus iniae QMA0190 [QLRC]
15287
15372
+
Leu
AAG
[ENA]
¡û
>W1911692068
QLRD01000020
Bacillota
Streptococcus iniae QMA0189 [QLRD]
15028
15113
+
Leu
AAG
[ENA]
¡û
>W1911692113
QLRE01000014
Bacillota
Streptococcus iniae QMA0188 [QLRE]
15029
15114
+
Leu
AAG
[ENA]
¡û
>W1911692274
QLRI01000021
Bacillota
Streptococcus iniae QMA0177 [QLRI]
152
237
+
Leu
AAG
[ENA]
¡û
>W1911692313
QLRJ01000025
Bacillota
Streptococcus iniae QMA0165 [QLRJ]
15029
15114
+
Leu
AAG
[ENA]
¡û
>W1911692392
QLRL01000018
Bacillota
Streptococcus iniae QMA0163 [QLRL]
7462
7547
+
Leu
AAG
[ENA]
¡û
>W1911692509
QLRO01000024
Bacillota
Streptococcus iniae QMA0160 [QLRO]
7462
7547
+
Leu
AAG
[ENA]
¡û
>W1911692548
QLRP01000018
Bacillota
Streptococcus iniae QMA0159 [QLRP]
7461
7546
+
Leu
AAG
[ENA]
¡û
>W1911692584
QLRQ01000020
Bacillota
Streptococcus iniae QMA0158 [QLRQ]
7462
7547
+
Leu
AAG
[ENA]
¡û
>W1911692664
QLRS01000020
Bacillota
Streptococcus iniae QMA0156 [QLRS]
7462
7547
+
Leu
AAG
[ENA]
¡û
>W1911692738
QLRU01000017
Bacillota
Streptococcus iniae QMA0150 [QLRU]
15017
15102
+
Leu
AAG
[ENA]
¡û
>W1911692816
QLRW01000013
Bacillota
Streptococcus iniae QMA0141 [QLRW]
15004
15089
+
Leu
AAG
[ENA]
¡û
>W1911692872
QLRX01000020
Bacillota
Streptococcus iniae QMA0140 [QLRX]
15519
15604
+
Leu
AAG
[ENA]
¡û
>W1911692950
QLRZ01000023
Bacillota
Streptococcus iniae QMA0138 [QLRZ]
15029
15114
+
Leu
AAG
[ENA]
¡û
>W1911693000
QLSA01000068
Bacillota
Streptococcus iniae QMA0137 [QLSA]
1576
1491
-
Leu
AAG
[ENA]
¡û
>W1911693080
QLSC01000074
Bacillota
Streptococcus iniae QMA0134 [QLSC]
1576
1491
-
Leu
AAG
[ENA]
¡û
>W1911693309
QLSI01000018
Bacillota
Streptococcus iniae QMA0083 [QLSI]
7462
7547
+
Leu
AAG
[ENA]
¡û
>W1911693391
QLSK01000025
Bacillota
Streptococcus iniae QMA0080 [QLSK]
15017
15102
+
Leu
AAG
[ENA]
¡û
>W1911693509
QLSN01000021
Bacillota
Streptococcus iniae QMA0074 [QLSN]
15029
15114
+
Leu
AAG
[ENA]
¡û
>W1911693548
QLSO01000022
Bacillota
Streptococcus iniae QMA0071 [QLSO]
7462
7547
+
Leu
AAG
[ENA]
¡û
>W1911788325
QYCR01000002
Bacillota
Streptococcus sp. X16XC17 [QYCR]
110317
110232
-
Leu
AAG
[ENA]
¡û
>W1810915179
QVQZ01000047
Bacillota
Streptococcus chenjunshii Z1(2018) [QVQZ]
6923
6838
-
Leu
AAG
[ENA]
¡û
>W1511354733
JRQN01000029
Bacillota
Streptococcus uberis CAIM 1894 [JRQN]
5018
4933
-
Leu
AAG
[ENA]
¡û
>W1511691277
LFYO02000003
Bacillota
Streptococcus sp. X13SY08 [LFYO]
223970
224058
+
Leu
AAG
[ENA]
¡û
>C161076233
CP014699
Bacillota
Streptococcus pantholopis TA 26 [CP014699]
1687266
1687181
-
Leu
AAG
[Ensembl]
¡û
>C161078070
CP014835
Bacillota
Streptococcus halotolerans HTS9 [CP014835]
1921714
1921799
+
Leu
AAG
-
¡û
>C131016027
CP005941
Bacillota
Streptococcus iniae SF1 [CP005941]
379763
379851
+
Leu
AAG
[Ensembl]
¡û
>W1610858814
LQRE01000113
Bacillota
Streptococcus sp. DD10 [LQRE]
24128
24043
-
Leu
AAG
[ENA]
¡û
>W1610858933
LQRH01000054
Bacillota
Streptococcus sp. DD13 [LQRH]
17006
17091
+
Leu
AAG
[ENA]
¡û
>W1610917543
LSNB01000019
Bacillota
Streptococcus iniae [LSNB]
27593
27505
-
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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