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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.427621 (46 seq.)
>W1710796584
LJSF01000027
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
16322
16249
-
Gly
TCC
[ENA]
¡û
>W131058624
ANFS01000001
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
127522
127595
+
Gly
TCC
[ENA]
¡û
>W131242030
BASI01000005
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
746636
746563
-
Gly
TCC
[ENA]
¡û
>W1711695316
MSIT01000006
Alphaproteobacteria
Salibaculum halophilum WDS1C4 [MSIT]
113800
113727
-
Gly
TCC
[ENA]
¡û
>W1711709211
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
1023924
1023851
-
Gly
TCC
[ENA]
¡û
>W1711709249
MSYQ01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYQ]
1197787
1197714
-
Gly
TCC
[ENA]
¡û
>W1711709300
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
217620
217547
-
Gly
TCC
[ENA]
¡û
>C171037026
CP015211
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
162080
162153
+
Gly
TCC
-
¡û
>C019347
CP000578
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
976710
976783
+
Gly
TCC
[Ensembl]
¡û
>WENV180232957
OBCP01000043
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
209521
209448
-
Gly
TCC
[ENA]
¢þ
>WENV180569522
OCLR01000124
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
119542
119615
+
Gly
TCC
[ENA]
¢þ
>WENV180570288
OCLS01000029
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
119542
119615
+
Gly
TCC
[ENA]
¢þ
>WENV180571314
OCLT01000045
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
209521
209448
-
Gly
TCC
[ENA]
¢þ
>WENV180573565
OCLW01000044
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
209521
209448
-
Gly
TCC
[ENA]
¢þ
>WENV180639628
OCRL01000047
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
209521
209448
-
Gly
TCC
[ENA]
¢þ
>WENV180640555
OCRM01000042
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
209521
209448
-
Gly
TCC
[ENA]
¢þ
>WENV181233938
OFET01000370
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
11666
11739
+
Gly
TCC
[ENA]
¢þ
>WENV019026
AACY020524387
Marine microbial communities from Global Ocean Sampling (GOS)
1976
2049
+
Gly
TCC
[ENA]
>WENV183716415
PDWJ01000002
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
334802
334875
+
Gly
TCC
[ENA]
¢þ
>WENV170422851
CEUN01184364
[CEUN] marine metagenome genome assembly TARA_124_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
92
19
-
Gly
TCC
[ENA]
¢þ
>WENV170810778
MDSW01154869
[MDSW] marine metagenome; seawater
90
17
-
Gly
TCC
[ENA]
¢þ
>C181191143
CP030272
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
162080
162153
+
Gly
TCC
-
¡û
>C191151046
CP036420
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
446133
446060
-
Gly
TCC
-
¡û
>W09104773
AAMF01000002
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
165054
164981
-
Gly
TCC
[ENA]
¡û
>W1910442681
FWFK01000004
Alphaproteobacteria
Roseivivax jejudonensis CECT 8625 [FWFK]
525851
525778
-
Gly
TCC
[ENA]
¡û
>W1910808383
MUAV01000002
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
59952
60025
+
Gly
TCC
[ENA]
¡û
>W1911491918
OAOQ01000005
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
5634
5707
+
Gly
TCC
[ENA]
¡û
>W1911696562
QMEK01000002
Alphaproteobacteria
Tropicimonas sp. IMCC34043 [QMEK]
360025
360098
+
Gly
TCC
[ENA]
¡û
>W1911749431
QWGP01000001
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
137609
137536
-
Gly
TCC
[ENA]
¡û
>W1911766275
QXDK01000006
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
127005
127078
+
Gly
TCC
[ENA]
¡û
>W1810463838
PZZW01000004
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
141883
141956
+
Gly
TCC
[ENA]
¡û
>W1810464032
QAAA01000006
Alphaproteobacteria
Rhodovulum imhoffii DSM 18064 [QAAA]
57753
57680
-
Gly
TCC
[ENA]
¡û
>W1810486747
QAYC01000002
Alphaproteobacteria
Rhodovulum kholense DSM 19783 [QAYC]
192951
193024
+
Gly
TCC
[ENA]
¡û
>W1810699105
QMCC01000005
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
415390
415317
-
Gly
TCC
[ENA]
¡û
>W1810722998
QNVX01000066
Alphaproteobacteria
Rhodovulum sp. BSW8 [QNVX]
149868
149941
+
Gly
TCC
[ENA]
¡û
>C151006780
CP004393
Alphaproteobacteria
Celeribacter indicus P73 [CP004393]
902278
902205
-
Gly
TCC
[Ensembl]
¡û
>W11160206
AFER01000002
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
351160
351233
+
Gly
TCC
[ENA]
¡û
>C161001447
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
3334499
3334572
+
Gly
TCC
[Ensembl]
¡û
>C161048386
CP012961
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]
162080
162153
+
Gly
TCC
-
¡û
>C161087739
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
3825005
3824932
-
Gly
TCC
-
¡û
>W121076814
AKBU01000002
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
298387
298460
+
Gly
TCC
[ENA]
¡û
>W121102157
AKVW01000002
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
162080
162153
+
Gly
TCC
[ENA]
¡û
>W1610526255
JPPB01000335
Alphaproteobacteria
alpha proteobacterium 3107 [JPPB]
235
308
+
Gly
TCC
[ENA]
¡û
>W1610660541
LJSF01000027
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
16322
16249
-
Gly
TCC
[ENA]
¡û
>W1710529322
FNNW01000008
Alphaproteobacteria
Celeribacter indicus [FNNW]
23433
23506
+
Gly
TCC
[ENA]
¡û
>W1710627556
JPPB01000335
Alphaproteobacteria
alpha proteobacterium 3107 [JPPB]
235
308
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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