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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.428407 (72 seq.)
>W131050703
AMXA01000005
Betaproteobacteria
Thauera sp. 28 [AMXA]
20211
20285
+
Gly
CCC
[ENA]
¡û
>W131050816
AMXC01000007
Betaproteobacteria
Thauera sp. 63 [AMXC]
170687
170615
-
Gly
CCC
[ENA]
¡û
>W1711581311
MNTX01000094
Betaproteobacteria
Sutterella sp. 54_7 [MNTX]
1427
1353
-
Gly
CCC
[ENA]
¡û
>C171085202
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
369705
369631
-
Gly
CCC
-
¡û
>W131204777
ATCF01000025
Betaproteobacteria
Sutterella wadsworthensis HGA0223 [ATCF]
24241
24315
+
Gly
CCC
[ENA]
¡û
>WENV180130512
OATG01000268
[OATG] human gut metagenome; faeces
7439
7365
-
Gly
CCC
[ENA]
¢þ
>WENV180143022
OATX01002803
[OATX] human gut metagenome; faeces
2367
2441
+
Gly
CCC
[ENA]
¢þ
>WENV180157161
OAUW01002381
[OAUW] human gut metagenome; faeces
3155
3081
-
Gly
CCC
[ENA]
¢þ
>WENV180163445
OAVH01019324
[OAVH] human gut metagenome; faeces
143
69
-
Gly
CCC
[ENA]
¢þ
>WENV180170821
OAVV01002454
[OAVV] human gut metagenome; faeces
1160
1234
+
Gly
CCC
[ENA]
¢þ
>WENV180194217
OAZX01000903
[OAZX] human gut metagenome; faeces
2393
2467
+
Gly
CCC
[ENA]
¢þ
>WENV180195709
OAZZ01000453
[OAZZ] human gut metagenome; faeces
4946
4872
-
Gly
CCC
[ENA]
¢þ
>WENV180334804
OBLF01059334
[OBLF] metagenome; feces
540
614
+
Gly
CCC
[ENA]
¢þ
>WENV180408247
OBUS01000319
[OBUS] human gut metagenome; faeces
5991
6065
+
Gly
CCC
[ENA]
¢þ
>WENV180437275
OBWO01001850
[OBWO] human gut metagenome; faeces
547
621
+
Gly
CCC
[ENA]
¢þ
>WENV180450065
OBXH01001732
[OBXH] human gut metagenome; faeces
2402
2476
+
Gly
CCC
[ENA]
¢þ
>WENV180451142
OBXI01001912
[OBXI] human gut metagenome; faeces
7686
7612
-
Gly
CCC
[ENA]
¢þ
>WENV180484586
OBZI01000549
[OBZI] human gut metagenome; faeces
10673
10747
+
Gly
CCC
[ENA]
¢þ
>WENV180508293
OCAT01069908
[OCAT] human gut metagenome; faeces
26
100
+
Gly
CCC
[ENA]
¢þ
>WENV180611860
OCPX01000122
[OCPX] human gut metagenome; human gut
37334
37260
-
Gly
CCC
[ENA]
¢þ
>WENV180876100
ODLT01003004
[ODLT] human metagenome; G_DNA_Stool
7439
7365
-
Gly
CCC
[ENA]
¢þ
>WENV181047194
ODXZ01000073
[ODXZ] human metagenome; G_DNA_Stool
40061
39987
-
Gly
CCC
[ENA]
¢þ
>WENV181048480
ODYC01003351
[ODYC] human metagenome; G_DNA_Stool
4152
4226
+
Gly
CCC
[ENA]
¢þ
>WENV181220875
OFCS01001781
[OFCS] metagenome; Human gut stool
1851
1925
+
Gly
CCC
[ENA]
¢þ
>WENV181457080
OGEH01005944
[OGEH] metagenome; Human gut stool
232
306
+
Gly
CCC
[ENA]
¢þ
>WENV181544595
OGIG01000644
[OGIG] metagenome; Human gut stool
2833
2907
+
Gly
CCC
[ENA]
¢þ
>WENV181571499
OGJP01000076
[OGJP] metagenome; Human gut stool
99334
99260
-
Gly
CCC
[ENA]
¢þ
>WENV181605263
OGLJ01003031
[OGLJ] metagenome; Human gut stool
1814
1888
+
Gly
CCC
[ENA]
¢þ
>WENV181648947
OGNR01008288
[OGNR] metagenome; Human gut stool
1018
944
-
Gly
CCC
[ENA]
¢þ
>WENV181660161
OGOF01006226
[OGOF] human gut metagenome; faeces
4262
4188
-
Gly
CCC
[ENA]
¢þ
>WENV181661579
OGOG01004148
[OGOG] human gut metagenome; faeces
8240
8166
-
Gly
CCC
[ENA]
¢þ
>WENV181674475
OGOO01089401
[OGOO] human gut metagenome; faeces
374
448
+
Gly
CCC
[ENA]
¢þ
>WENV181726686
OGPZ01003572
[OGPZ] human gut metagenome; faeces
4288
4214
-
Gly
CCC
[ENA]
¢þ
>WENV181729292
OGQB01003501
[OGQB] human gut metagenome; faeces
6161
6235
+
Gly
CCC
[ENA]
¢þ
>WENV181735857
OGQG01008743
[OGQG] human gut metagenome; faeces
2563
2637
+
Gly
CCC
[ENA]
¢þ
>WENV181786740
OGRN01005232
[OGRN] human gut metagenome; faeces
4254
4180
-
Gly
CCC
[ENA]
¢þ
>WENV181799689
OGRY01003249
[OGRY] human gut metagenome; faeces
1831
1757
-
Gly
CCC
[ENA]
¢þ
>WENV181829202
OGUN01008142
[OGUN] human gut metagenome; faeces
120
46
-
Gly
CCC
[ENA]
¢þ
>WENV181952084
OGZH01050201
[OGZH] human gut metagenome; faeces
385
459
+
Gly
CCC
[ENA]
¢þ
>WENV182019677
OHBY01026029
[OHBY] human gut metagenome; feces
520
446
-
Gly
CCC
[ENA]
¢þ
>WENV182096136
OHHM01030494
[OHHM] human gut metagenome; feces
214
140
-
Gly
CCC
[ENA]
¢þ
>WENV182130230
OHKA01033901
[OHKA] human gut metagenome; feces
374
448
+
Gly
CCC
[ENA]
¢þ
>WENV182615582
OJKC01005173
[OJKC] metagenome; faeces
5281
5355
+
Gly
CCC
[ENA]
¢þ
>WENV182652433
OJMH01017664
[OJMH] human gut metagenome; feces
1278
1204
-
Gly
CCC
[ENA]
¢þ
>WENV182698258
OJOM01001740
[OJOM] human gut metagenome; stool sample
7010
6936
-
Gly
CCC
[ENA]
¢þ
>WENV182754047
OJRD01000842
[OJRD] human gut metagenome; stool sample
6023
6097
+
Gly
CCC
[ENA]
¢þ
>WENV182916013
OKTS01027894
[OKTS] human gut metagenome; feces
415
489
+
Gly
CCC
[ENA]
¢þ
>WENV183332041
OLWC01014797
[OLWC] human gut metagenome; feces
327
401
+
Gly
CCC
[ENA]
¢þ
>WENV183368490
OLXR01010808
[OLXR] human gut metagenome; feces
314
240
-
Gly
CCC
[ENA]
¢þ
>WENV183397463
OLZJ01034244
[OLZJ] human gut metagenome; feces
420
494
+
Gly
CCC
[ENA]
¢þ
>WENV183401479
OLZT01026359
[OLZT] human gut metagenome; feces
621
547
-
Gly
CCC
[ENA]
¢þ
>WENV183413648
OMAN01026270
[OMAN] human gut metagenome; feces
172
246
+
Gly
CCC
[ENA]
¢þ
>WENV183430014
OMBP01002424
[OMBP] human gut metagenome; feces
3814
3888
+
Gly
CCC
[ENA]
¢þ
>WENV183437666
OMCD01043150
[OMCD] human gut metagenome; feces
287
361
+
Gly
CCC
[ENA]
¢þ
>WENV183439961
OMCG01007165
[OMCG] human gut metagenome; feces
2920
2846
-
Gly
CCC
[ENA]
¢þ
>WENV183442669
OMCM01000889
[OMCM] human gut metagenome; feces
15627
15701
+
Gly
CCC
[ENA]
¢þ
>WENV183475227
OMEV01009087
[OMEV] human gut metagenome; feces
1013
939
-
Gly
CCC
[ENA]
¢þ
>WENV183556333
OOBO01000334
[OOBO] human gut metagenome; human gut
36665
36591
-
Gly
CCC
[ENA]
¢þ
>WENV183584765
OOCR01000076
[OOCR] human gut metagenome; human gut
96452
96378
-
Gly
CCC
[ENA]
¢þ
>WENV170046276
CDYY01029881
[CDYY] gut metagenome; human stools
7764
7690
-
Gly
CCC
[ENA]
¢þ
>WENV170064519
CDZK01046789
[CDZK] gut metagenome; human stools
1950
1876
-
Gly
CCC
[ENA]
¢þ
>WENV170650174
JRYD01018426
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
190
116
-
Gly
CCC
[ENA]
¢þ
>WENV170658165
JTFP01063969
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
47
121
+
Gly
CCC
[ENA]
¢þ
>C181042995
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
2880031
2880105
+
Gly
CCC
-
¡û
>C181165158
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
2774839
2774913
+
Gly
CCC
-
¡û
>C181176798
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
2787278
2787352
+
Gly
CCC
-
¡û
>C191019171
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
4603844
4603918
+
Gly
CCC
-
¡û
>W1911114350
NOIH01000003
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
618246
618318
+
Gly
CCC
[ENA]
¡û
>W1810721255
QNRV01000046
Betaproteobacteria
Sutterella wadsworthensis DSM 14016 [QNRV]
12598
12524
-
Gly
CCC
[ENA]
¡û
>W1610071696
BCUG01000025
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
24368
24294
-
Gly
CCC
[ENA]
¡û
>W1710068898
BCUG01000025
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
24368
24294
-
Gly
CCC
[ENA]
¡û
>W1710539460
FNVJ01000011
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
35998
36072
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK