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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.428524 (114 seq.)
>W1710791886
LJOD01000003
Bacteroidota
Chryseobacterium indologenes [LJOD]
237408
237337
-
Cys
GCA
[ENA]
¡û
>W1710855696
LLYZ01000003
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
125499
125572
+
Cys
GCA
[ENA]
¡û
>W1710857469
LMAH01000006
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
114876
114947
+
Cys
GCA
[ENA]
¡û
>W1710857494
LMAI01000003
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
163722
163795
+
Cys
GCA
[ENA]
¡û
>W1710876627
LMPJ01000011
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
107764
107835
+
Cys
GCA
[ENA]
¡û
>W1710987471
LPUR01000001
Bacteroidota
Chryseobacterium kwangjuense [LPUR]
1801342
1801415
+
Cys
GCA
[ENA]
¡û
>W1711132240
LUVZ01000046
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
166270
166343
+
Cys
GCA
[ENA]
¡û
>W1711318279
MAYF01000019
Bacteroidota
Chryseobacterium contaminans [MAYF]
10881
10810
-
Cys
GCA
[ENA]
¡û
>W1711318461
MAYH01000034
Bacteroidota
Chryseobacterium artocarpi [MAYH]
296578
296649
+
Cys
GCA
[ENA]
¡û
>W1711385061
MEDR01000035
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
94767
94696
-
Cys
GCA
[ENA]
¡û
>W1711487719
MKGI01000075
Bacteroidota
Cloacibacterium normanense [MKGI]
34972
34899
-
Cys
GCA
[ENA]
¡û
>W1711503233
MKTK01000011
Bacteroidota
Chryseobacterium sp. 39-10 [MKTK]
39211
39282
+
Cys
GCA
[ENA]
¡û
>W1711767810
MVAG01000193
Bacteroidota
Chryseobacterium mucoviscidosis VT16-26 [MVAG]
80981
80910
-
Cys
GCA
[ENA]
¡û
>WENV181834713
OGVG01000065
[OGVG] freshwater metagenome; freshwater
8726
8655
-
Cys
GCA
[ENA]
¢þ
>W141223100
BACY01000290
Bacteroidota
Flavobacterium sp. B17 [BACY]
10085
10012
-
Cys
GCA
[ENA]
¡û
>W141233140
BAVL01000019
Bacteroidota
Chryseobacterium indologenes NBRC 14944 [BAVL]
40178
40249
+
Cys
GCA
[ENA]
¡û
>W141261542
CCAV010000006
Bacteroidota
Chryseobacterium oranimense G311 [CCAV]
325959
326032
+
Cys
GCA
[ENA]
¡û
>W141289815
JARQ01000004
Bacteroidota
Chryseobacterium hispalense DSM 25574 [JARQ]
398648
398575
-
Cys
GCA
[ENA]
¡û
>WENV183729463
PJTQ01043172
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
230
157
-
Cys
GCA
[ENA]
¢þ
>WENV183741618
PJUG01000192
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
20363
20292
-
Cys
GCA
[ENA]
¢þ
>WENV183742102
PJUH01000274
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
2903
2832
-
Cys
GCA
[ENA]
¢þ
>WENV183742485
PJUI01000003
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
362102
362031
-
Cys
GCA
[ENA]
¢þ
>C181061607
CP022282
Bacteroidota
Chryseobacterium sp. T16E-39 [CP022282]
2370131
2370202
+
Cys
GCA
-
¡û
>C181092448
CP023968
Bacteroidota
Chryseobacterium indologenes FDAARGOS_379 [CP023968]
3148689
3148760
+
Cys
GCA
-
¡û
>C181225812
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
2042944
2042871
-
Cys
GCA
-
¡û
>C191112452
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
3811741
3811812
+
Cys
GCA
-
¡û
>C191112956
CP033828
Bacteroidota
Chryseobacterium indologenes FDAARGOS_510 [CP033828]
515556
515485
-
Cys
GCA
-
¡û
>C191115252
CP033914
Bacteroidota
Chryseobacterium shandongense G0239 [CP033914]
836480
836409
-
Cys
GCA
-
¡û
>C191115510
CP033920
Bacteroidota
Chryseobacterium carnipullorum G0188 [CP033920]
2325464
2325393
-
Cys
GCA
-
¡û
>C191115621
CP033921
Bacteroidota
Chryseobacterium carnipullorum F9942 [CP033921]
349359
349288
-
Cys
GCA
-
¡û
>C191115802
CP033924
Bacteroidota
Chryseobacterium lactis KC_1864 [CP033924]
281720
281793
+
Cys
GCA
-
¡û
>C191115914
CP033925
Bacteroidota
Chryseobacterium lactis G0197 [CP033925]
3785044
3785117
+
Cys
GCA
-
¡û
>C191115977
CP033926
Bacteroidota
Chryseobacterium joostei DSM 16927 [CP033926]
2352762
2352833
+
Cys
GCA
-
¡û
>C191116195
CP033930
Bacteroidota
Chryseobacterium indologenes H5559 [CP033930]
2527759
2527830
+
Cys
GCA
-
¡û
>C191116279
CP033931
Bacteroidota
Chryseobacterium bernardetii H4638 [CP033931]
2368528
2368599
+
Cys
GCA
-
¡û
>C191116361
CP033932
Bacteroidota
Chryseobacterium bernardetii G0229 [CP033932]
217721
217792
+
Cys
GCA
-
¡û
>C191120902
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
2232748
2232821
+
Cys
GCA
-
¡û
>C191120957
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
605986
605915
-
Cys
GCA
-
¡û
>C191204246
LR134289
Bacteroidota
Chryseobacterium gleum NCTC11432 [LR134289]
2681384
2681455
+
Cys
GCA
-
¡û
>C191218914
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
2366368
2366439
+
Cys
GCA
-
¡û
>W141802121
JPEQ01000027
Bacteroidota
Chryseobacterium sp. P1-3 [JPEQ]
8644
8715
+
Cys
GCA
[ENA]
¡û
>W141809259
JPRI01000010
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
128484
128555
+
Cys
GCA
[ENA]
¡û
>W141809310
JPRJ01000029
Bacteroidota
Chryseobacterium piperi [JPRJ]
44881
44954
+
Cys
GCA
[ENA]
¡û
>W141809521
JPRO01000002
Bacteroidota
Chryseobacterium luteum [JPRO]
315163
315092
-
Cys
GCA
[ENA]
¡û
>W141815929
JQJM01000017
Bacteroidota
Chryseobacterium sp. CF365 [JQJM]
66914
66841
-
Cys
GCA
[ENA]
¡û
>W141817733
JQKZ01000021
Bacteroidota
Chryseobacterium sp. CF284 [JQKZ]
2953
2880
-
Cys
GCA
[ENA]
¡û
>W141819095
JQMA01000020
Bacteroidota
Chryseobacterium sp. CF299 [JQMA]
2961
2888
-
Cys
GCA
[ENA]
¡û
>W1910184822
BJTC01000005
Bacteroidota
Chryseobacterium sp. ON_d1 [BJTC]
241905
241834
-
Cys
GCA
[ENA]
¡û
>W1910439671
FWDI01000005
Bacteroidota
Chryseobacterium phocaeense 6021061333 [FWDI]
3205984
3206057
+
Cys
GCA
[ENA]
¡û
>W1911218465
NRQT01000002
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
430347
430276
-
Cys
GCA
[ENA]
¡û
>W1911566385
PCOU01000008
Bacteroidota
Chryseobacterium sp. MYb7 [PCOU]
162253
162324
+
Cys
GCA
[ENA]
¡û
>W1911567028
PCPH01000001
Bacteroidota
Chryseobacterium culicis MYb44 [PCPH]
1054045
1054116
+
Cys
GCA
[ENA]
¡û
>W1911567454
PCPP01000001
Bacteroidota
Chryseobacterium culicis MYb25 [PCPP]
2415878
2415949
+
Cys
GCA
[ENA]
¡û
>W1911586403
PIZV01000049
Bacteroidota
Chryseobacterium sp. PMSZPI [PIZV]
14932
14861
-
Cys
GCA
[ENA]
¡û
>W1911647570
QAJO01000007
Bacteroidota
Chryseobacterium sp. KBW03 [QAJO]
256875
256804
-
Cys
GCA
[ENA]
¡û
>W1911680415
QICI01000036
Bacteroidota
Chryseobacterium sp. CH21 [QICI]
108302
108231
-
Cys
GCA
[ENA]
¡û
>W1911680479
QICX01000005
Bacteroidota
Chryseobacterium sp. CBTAP 102 [QICX]
357
286
-
Cys
GCA
[ENA]
¡û
>W1911701192
QNUE01000005
Bacteroidota
Chryseobacterium flavum KCTC 12877 [QNUE]
139924
139995
+
Cys
GCA
[ENA]
¡û
>W1911701291
QNUF01000033
Bacteroidota
Chryseobacterium rhizosphaerae KCTC 22548 [QNUF]
45377
45448
+
Cys
GCA
[ENA]
¡û
>W1911701381
QNUH01000012
Bacteroidota
Chryseobacterium elymi KCTC 22547 [QNUH]
70317
70246
-
Cys
GCA
[ENA]
¡û
>W1911701837
QNVT01000039
Bacteroidota
Chryseobacterium pennae 1_F178 [QNVT]
288
217
-
Cys
GCA
[ENA]
¡û
>W1911701849
QNVU01000006
Bacteroidota
Candidatus Chryseobacterium massiliae massiliae CCUG 51329 [QNVU]
136231
136160
-
Cys
GCA
[ENA]
¡û
>W1911749757
QWIU01000002
Bacteroidota
Chryseobacterium nematophagum JUb129 [QWIU]
3809695
3809766
+
Cys
GCA
[ENA]
¡û
>W1810071761
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
4780225
4780296
+
Cys
GCA
[ENA]
¡û
>W1810234044
PPED02000002
Bacteroidota
Chryseobacterium phosphatilyticum ISE14 [PPED]
458436
458365
-
Cys
GCA
[ENA]
¡û
>W1810234385
PPEI02000004
Bacteroidota
Chryseobacterium oncorhynchi 701B-08 [PPEI]
96640
96711
+
Cys
GCA
[ENA]
¡û
>W1810304719
PTPZ01000009
Bacteroidota
Cloacibacterium normanense IMET F [PTPZ]
31701
31630
-
Cys
GCA
[ENA]
¡û
>W1810385665
PXUE01000001
Bacteroidota
Chryseobacterium aurantiacum F30 [PXUE]
414088
414017
-
Cys
GCA
[ENA]
¡û
>W1810538565
QDFZ01000002
Bacteroidota
Chryseobacterium sp. KLBC 52 [QDFZ]
46239
46310
+
Cys
GCA
[ENA]
¡û
>W1810570135
QEHP01000113
Bacteroidota
Chryseobacterium sp. HMWF035 [QEHP]
172789
172860
+
Cys
GCA
[ENA]
¡û
>W1810758147
QPIE01000002
Bacteroidota
Chryseobacterium lacus YLOS41 [QPIE]
50057
50128
+
Cys
GCA
[ENA]
¡û
>W1810860748
QTTJ01000001
Bacteroidota
Chryseobacterium sp. 1335 [QTTJ]
423867
423796
-
Cys
GCA
[ENA]
¡û
>C151002600
AP014624
Bacteroidota
Chryseobacterium sp. StRB126 [AP014624]
4797766
4797837
+
Cys
GCA
[Ensembl]
¡û
>C151062185
CP009928
Bacteroidota
Chryseobacterium gallinarum DSM 27622 [CP009928]
779070
779141
+
Cys
GCA
[Ensembl]
¡û
>W1510072614
CDHM01000006
Bacteroidota
Chryseobacterium oranimense G311 [CDHM]
325959
326032
+
Cys
GCA
[ENA]
¡û
>W1511432435
JUGN01000005
Bacteroidota
Chryseobacterium sp. YR480 [JUGN]
12503
12432
-
Cys
GCA
[ENA]
¡û
>W1511432572
JUGP01000006
Bacteroidota
Chryseobacterium sp. YR477 [JUGP]
783602
783673
+
Cys
GCA
[ENA]
¡û
>W1511432979
JUGX01000005
Bacteroidota
Chryseobacterium sp. OV715 [JUGX]
67592
67665
+
Cys
GCA
[ENA]
¡û
>W1511587145
LAZY01000023
Bacteroidota
Chryseobacterium indologenes J31 [LAZY]
74107
74178
+
Cys
GCA
[ENA]
¡û
>W1511685109
LFND01000002
Bacteroidota
Chryseobacterium angstadtii KM [LFND]
572471
572542
+
Cys
GCA
[ENA]
¡û
>W1511685296
LFNG01000006
Bacteroidota
Chryseobacterium koreense CCUG 49689 [LFNG]
97928
97855
-
Cys
GCA
[ENA]
¡û
>W1511699483
LGIP01000002
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
165462
165389
-
Cys
GCA
[ENA]
¡û
>C161055051
CP013293
Bacteroidota
Chryseobacterium sp. IHB B 17019 [CP013293]
2651708
2651779
+
Cys
GCA
[Ensembl]
¡û
>C161084453
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
2898098
2898025
-
Cys
GCA
[Ensembl]
¡û
>W1610205649
FCNN01000172
Bacteroidota
Chryseobacterium indologenes [FCNN]
16627
16556
-
Cys
GCA
[ENA]
¡û
>W1610655811
LJOD01000003
Bacteroidota
Chryseobacterium indologenes [LJOD]
237408
237337
-
Cys
GCA
[ENA]
¡û
>W1610718077
LLYZ01000003
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
125499
125572
+
Cys
GCA
[ENA]
¡û
>W1610719850
LMAH01000006
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
114876
114947
+
Cys
GCA
[ENA]
¡û
>W1610738973
LMPJ01000011
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
107764
107835
+
Cys
GCA
[ENA]
¡û
>W1610842415
LPUR01000001
Bacteroidota
Chryseobacterium kwangjuense [LPUR]
1801342
1801415
+
Cys
GCA
[ENA]
¡û
>W1610943313
LUVZ01000046
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
166270
166343
+
Cys
GCA
[ENA]
¡û
>W1611061622
MAYF01000019
Bacteroidota
Chryseobacterium contaminans [MAYF]
10881
10810
-
Cys
GCA
[ENA]
¡û
>W1611061711
MAYG01000001
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
2911549
2911620
+
Cys
GCA
[ENA]
¡û
>W1611061804
MAYH01000034
Bacteroidota
Chryseobacterium artocarpi [MAYH]
296578
296649
+
Cys
GCA
[ENA]
¡û
>W1710207150
FCNN01000172
Bacteroidota
Chryseobacterium indologenes [FCNN]
16627
16556
-
Cys
GCA
[ENA]
¡û
>W1710518195
FNDW01000001
Bacteroidota
Chryseobacterium taeanense [FNDW]
383685
383614
-
Cys
GCA
[ENA]
¡û
>W1710518813
FNEG01000005
Bacteroidota
Chryseobacterium jejuense [FNEG]
432763
432834
+
Cys
GCA
[ENA]
¡û
>W1710540289
FNWQ01000001
Bacteroidota
Chryseobacterium culicis [FNWQ]
437219
437148
-
Cys
GCA
[ENA]
¡û
>W1710545832
FOBV01000001
Bacteroidota
Chryseobacterium taichungense [FOBV]
436138
436209
+
Cys
GCA
[ENA]
¡û
>W1710554852
FOIU01000001
Bacteroidota
Chryseobacterium wanjuense [FOIU]
153328
153257
-
Cys
GCA
[ENA]
¡û
>W1710565760
FORL01000004
Bacteroidota
Chryseobacterium indologenes [FORL]
74585
74514
-
Cys
GCA
[ENA]
¡û
>W1710570402
FOVD01000001
Bacteroidota
Chryseobacterium oleae [FOVD]
1532590
1532663
+
Cys
GCA
[ENA]
¡û
>W1710582280
FPKW01000020
Bacteroidota
Chryseobacterium limigenitum [FPKW]
64311
64382
+
Cys
GCA
[ENA]
¡û
>W1710582617
FQUD01000001
Bacteroidota
Chryseobacterium sp. OV279 [FQUD]
490809
490736
-
Cys
GCA
[ENA]
¡û
>W1710584464
FQVO01000002
Bacteroidota
Chryseobacterium takakiae [FQVO]
383884
383811
-
Cys
GCA
[ENA]
¡û
>W1710585942
FQWT01000006
Bacteroidota
Chryseobacterium oranimense [FQWT]
75815
75886
+
Cys
GCA
[ENA]
¡û
>W1710590246
FRAV01000028
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
432
359
-
Cys
GCA
[ENA]
¡û
>W1710591124
FRBM01000010
Bacteroidota
Chryseobacterium contaminans [FRBM]
88447
88376
-
Cys
GCA
[ENA]
¡û
>W1710592021
FRCD01000010
Bacteroidota
Chryseobacterium carnipullorum [FRCD]
131914
131843
-
Cys
GCA
[ENA]
¡û
>W1710596680
FTMT01000008
Bacteroidota
Chryseobacterium sp. RU33C [FTMT]
63682
63611
-
Cys
GCA
[ENA]
¡û
>W1710598364
FTNY01000004
Bacteroidota
Chryseobacterium shigense [FTNY]
393097
393168
+
Cys
GCA
[ENA]
¡û
>W1710599053
FTOL01000002
Bacteroidota
Chryseobacterium ureilyticum [FTOL]
302718
302789
+
Cys
GCA
[ENA]
¡û
>W1710599578
FTOV01000002
Bacteroidota
Chryseobacterium gambrini [FTOV]
437036
436965
-
Cys
GCA
[ENA]
¡û
>W1710600168
FTPU01000003
Bacteroidota
Epilithonimonas bovis DSM 19482 [FTPU]
26146
26217
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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