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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.428544 (73 seq.)
>W131065919
ANOE01000016
Bacillota
Clostridium tyrobutyricum UC7086 [ANOE]
88
161
+
Cys
GCA
[ENA]
¡û
>W131082794
ANZB01000001
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
69
142
+
Cys
GCA
[ENA]
¡û
>W131082801
ANZB01000004
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
88779
88852
+
Cys
GCA
[ENA]
¡û
>W131111661
APMH01000008
Bacillota
Clostridium tyrobutyricum DSM 2637 = ATCC 25755 [APMH]
4
77
+
Cys
GCA
[ENA]
¡û
>W1711294522
LZZM01000053
Bacillota
Clostridium puniceum [LZZM]
411
484
+
Cys
GCA
[ENA]
¡û
>W131252504
CBML010000006
Bacillota
Clostridium chauvoei JF4335 [CBML]
1340957
1341030
+
Cys
GCA
[ENA]
¡û
>W1711462099
MJHL01000028
Bacillota
Clostridium baratii [MJHL]
153977
154050
+
Cys
GCA
[ENA]
¡û
>W1711462230
MJHN01000019
Bacillota
Clostridium baratii [MJHN]
1331907
1331980
+
Cys
GCA
[ENA]
¡û
>W1711791770
MWJC01000092
Bacillota
Clostridium botulinum [MWJC]
384
457
+
Cys
GCA
[ENA]
¡û
>W1711791798
MWJD01000003
Bacillota
Clostridium botulinum [MWJD]
221564
221491
-
Cys
GCA
[ENA]
¡û
>W1711903057
MZGX01000004
Bacillota
Ruminiclostridium hungatei [MZGX]
117702
117629
-
Cys
GCA
[ENA]
¡û
>C171030657
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
128632
128559
-
Cys
GCA
-
¡û
>C171059501
CP017253
Bacillota
Clostridium taeniosporum 1/k [CP017253]
189257
189330
+
Cys
GCA
-
¡û
>C171131124
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
1653782
1653855
+
Cys
GCA
-
¡û
>C004971
AE001437
Bacillota
Clostridium acetobutylicum ATCC 824 [AE001437]
346199
346272
+
Cys
GCA
[Ensembl]
¡û
>C005029
AE001437
Bacillota
Clostridium acetobutylicum ATCC 824 [AE001437]
2480174
2480101
-
Cys
GCA
[Ensembl]
¡û
>WENV180042288
LQAE01000152
[LQAE] bioreactor metagenome; bioreactor_1 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
578
651
+
Cys
GCA
[ENA]
¢þ
>WENV180042386
LQAE01012313
[LQAE] bioreactor metagenome; bioreactor_1 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
205
132
-
Cys
GCA
[ENA]
¢þ
>WENV180043938
LQAJ01000082
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
1446
1519
+
Cys
GCA
[ENA]
¢þ
>WENV180126684
OATA01000012
[OATA] human gut metagenome; faeces
342222
342295
+
Cys
GCA
[ENA]
¢þ
>WENV180159217
OAVB01000772
[OAVB] human gut metagenome; faeces
406
333
-
Cys
GCA
[ENA]
¢þ
>WENV180218800
OBAR01164020
[OBAR] human gut metagenome; human gut
211
138
-
Cys
GCA
[ENA]
¢þ
>WENV180244237
OBDK01016989
[OBDK] human gut metagenome; human gut
29
102
+
Cys
GCA
[ENA]
¢þ
>WENV180531923
OCHL01000027
[OCHL] human gut metagenome; human gut
178404
178477
+
Cys
GCA
[ENA]
¢þ
>WENV180600723
OCPQ01000806
[OCPQ] human gut metagenome; faeces
16868
16941
+
Cys
GCA
[ENA]
¢þ
>WENV180786285
ODIR01154032
[ODIR] human metagenome; G_DNA_Stool
358
285
-
Cys
GCA
[ENA]
¢þ
>WENV180840836
ODKJ01012331
[ODKJ] human metagenome; G_DNA_Stool
1737
1664
-
Cys
GCA
[ENA]
¢þ
>WENV180870647
ODLN01003794
[ODLN] human metagenome; G_DNA_Stool
187
114
-
Cys
GCA
[ENA]
¢þ
>WENV181029072
ODXE01111556
[ODXE] human metagenome; G_DNA_Stool
59
132
+
Cys
GCA
[ENA]
¢þ
>WENV181035463
ODXO01048356
[ODXO] human metagenome; G_DNA_Stool
317
244
-
Cys
GCA
[ENA]
¢þ
>WENV181331647
OFLZ01015037
[OFLZ] human gut metagenome; human gut
1694
1621
-
Cys
GCA
[ENA]
¢þ
>W141144126
AWTA01000026
Bacillota
Clostridium sp. ATCC 29733 [AWTA]
80969
80896
-
Cys
GCA
[ENA]
¡û
>WENV181481734
OGFI01036664
[OGFI] metagenome; Human gut stool
458
385
-
Cys
GCA
[ENA]
¢þ
>WENV181724418
OGPX01003093
[OGPX] human gut metagenome; faeces
59
132
+
Cys
GCA
[ENA]
¢þ
>WENV181909817
OGYC01000868
[OGYC] human gut metagenome; faeces
1098
1025
-
Cys
GCA
[ENA]
¢þ
>WENV181951348
OGZH01000562
[OGZH] human gut metagenome; faeces
64
137
+
Cys
GCA
[ENA]
¢þ
>WENV181977871
OHAE01001019
[OHAE] human gut metagenome; faeces
22087
22160
+
Cys
GCA
[ENA]
¢þ
>WENV182019034
OHBX01023772
[OHBX] human gut metagenome; feces
60
133
+
Cys
GCA
[ENA]
¢þ
>WENV182061465
OHET01043038
[OHET] human gut metagenome; feces
457
384
-
Cys
GCA
[ENA]
¢þ
>WENV182171125
OHMX01000004
[OHMX] human gut metagenome; feces
154428
154501
+
Cys
GCA
[ENA]
¢þ
>C08003376
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
3272003
3272076
+
Cys
GCA
[Ensembl]
¡û
>WENV182248269
OHSO01007995
[OHSO] human gut metagenome; feces
64
137
+
Cys
GCA
[ENA]
¢þ
>WENV182255965
OHTD01009362
[OHTD] human gut metagenome; feces
64
137
+
Cys
GCA
[ENA]
¢þ
>WENV182344423
OIAL01020046
[OIAL] human gut metagenome; feces
71
144
+
Cys
GCA
[ENA]
¢þ
>WENV182393117
OIEH01005238
[OIEH] human gut metagenome; human gut
64
137
+
Cys
GCA
[ENA]
¢þ
>WENV182952104
OKVV01002916
[OKVV] human gut metagenome; human gut
2507
2434
-
Cys
GCA
[ENA]
¢þ
>WENV183557384
OOBP01000461
[OOBP] human gut metagenome; human gut
236
163
-
Cys
GCA
[ENA]
¢þ
>WENV170054513
CDZE01020282
[CDZE] gut metagenome; human stools
805
732
-
Cys
GCA
[ENA]
¢þ
>C181031803
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
971213
971140
-
Cys
GCA
-
¡û
>C181031976
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
1850849
1850922
+
Cys
GCA
-
¡û
>C191051240
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
1652909
1652982
+
Cys
GCA
-
¡û
>C191089280
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
73175
73248
+
Cys
GCA
-
¡û
>C191089319
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
863322
863395
+
Cys
GCA
-
¡û
>C191106396
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
67283
67356
+
Cys
GCA
-
¡û
>C191138080
CP035280
Bacillota
Clostridium sp. JN-9 [CP035280]
83267
83340
+
Cys
GCA
-
¡û
>C191138140
CP035280
Bacillota
Clostridium sp. JN-9 [CP035280]
2663013
2662940
-
Cys
GCA
-
¡û
>W141822388
JQOK01000099
Bacillota
Clostridium botulinum [JQOK]
436
509
+
Cys
GCA
[ENA]
¡û
>W1911533159
OKQO01000002
Bacillota
Neobittarella massiliensis Marseille-P4047 [OKQO]
327462
327389
-
Cys
GCA
[ENA]
¡û
>W1810867212
QTYG01000036
Bacillota
Ruminococcus sp. AM31-15AC [QTYG]
28278
28351
+
Cys
GCA
[ENA]
¡û
>C151014232
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
2991651
2991724
+
Cys
GCA
[Ensembl]
¡û
>W1511551770
JZTY01000016
Bacillota
Clostridium baratii 771-14 [JZTY]
66113
66040
-
Cys
GCA
[ENA]
¡û
>W1511699178
LGIJ01000003
Bacillota
Clostridium botulinum ATCC 9564 [LGIJ]
384
457
+
Cys
GCA
[ENA]
¡û
>W1610104204
CZBO01000001
Bacillota
Clostridium baratii [CZBO]
342143
342070
-
Cys
GCA
[ENA]
¡û
>W1610163702
FAUJ01000016
Bacillota
Bittarella massiliensis (ex Durand et al. 2017) GD6 [FAUJ]
88497
88424
-
Cys
GCA
[ENA]
¡û
>W1610163707
FAUJ01000016
Bacillota
Bittarella massiliensis (ex Durand et al. 2017) GD6 [FAUJ]
84990
84917
-
Cys
GCA
[ENA]
¡û
>W1610604257
LFQW01000012
Bacillota
Clostridium botulinum [LFQW]
386
459
+
Cys
GCA
[ENA]
¡û
>W1710106908
CZBO01000001
Bacillota
Clostridium baratii [CZBO]
342143
342070
-
Cys
GCA
[ENA]
¡û
>W1710165369
FAUJ01000016
Bacillota
Bittarella massiliensis (ex Durand et al. 2017) GD6 [FAUJ]
88497
88424
-
Cys
GCA
[ENA]
¡û
>W1710165374
FAUJ01000016
Bacillota
Bittarella massiliensis (ex Durand et al. 2017) GD6 [FAUJ]
84990
84917
-
Cys
GCA
[ENA]
¡û
>W1710584324
FQVM01000003
Bacillota
Clostridium fallax [FQVM]
371
444
+
Cys
GCA
[ENA]
¡û
>W1710584357
FQVM01000013
Bacillota
Clostridium fallax [FQVM]
23157
23230
+
Cys
GCA
[ENA]
¡û
>W1710723946
LFPG01000013
Bacillota
Clostridium botulinum [LFPG]
160
233
+
Cys
GCA
[ENA]
¡û
>W1710725773
LFQW01000012
Bacillota
Clostridium botulinum [LFQW]
386
459
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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