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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.428908 (45 seq.)
>W131010425
AHYM01000007
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
259887
259817
-
Cys
GCA
[ENA]
¡û
>W131037508
AMFD01000009
Bacillota
Lactococcus garvieae I113 [AMFD]
55337
55267
-
Cys
GCA
[ENA]
¡û
>W131037552
AMFE01000017
Bacillota
Lactococcus garvieae Tac2 [AMFE]
55153
55083
-
Cys
GCA
[ENA]
¡û
>W1711006242
LQOE01000074
Bacillota
Lactococcus sp. DD01 [LQOE]
57928
57858
-
Cys
GCA
[ENA]
¡û
>W1711228303
LXWL01000001
Bacillota
Lactococcus garvieae [LXWL]
305364
305434
+
Cys
GCA
[ENA]
¡û
>W131202462
ASWT01000006
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
1267646
1267576
-
Cys
GCA
[ENA]
¡û
>W1711744862
MUIZ01000003
Bacillota
Lactococcus petauri 159469 [MUIZ]
62780
62710
-
Cys
GCA
[ENA]
¡û
>W1711942767
NBBK01000006
Bacillota
Lactococcus garvieae [NBBK]
79989
79919
-
Cys
GCA
[ENA]
¡û
>WENV180182207
OAWO01001744
[OAWO] human gut metagenome; faeces
158
88
-
Cys
GCA
[ENA]
¢þ
>W141035107
ALKT01000050
Bacillota
Streptococcus suis 12814 [ALKT]
24303
24233
-
Cys
GCA
[ENA]
¡û
>W141037282
ALND01000042
Bacillota
Streptococcus suis YS67 [ALND]
69552
69622
+
Cys
GCA
[ENA]
¡û
>WENV181070226
OEAE01000476
[OEAE] human metagenome; G_DNA_Supragingival plaque
7403
7331
-
Cys
GCA
[ENA]
¢þ
>W141238076
BBJW01000002
Bacillota
Lactococcus garvieae NBRC 100934 [BBJW]
77438
77368
-
Cys
GCA
[ENA]
¡û
>WENV182517937
OIWP01000028
[OIWP] human gut metagenome; faeces
146216
146286
+
Cys
GCA
[ENA]
¢þ
>WENV183276707
OLRZ01020400
[OLRZ] human gut metagenome; faeces
1497
1567
+
Cys
GCA
[ENA]
¢þ
>WENV170547738
CXTS01000033
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
244
174
-
Cys
GCA
[ENA]
¢þ
>WENV170548331
CXUD01001615
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
168
98
-
Cys
GCA
[ENA]
¢þ
>WENV170549770
CXVI01000126
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
72
142
+
Cys
GCA
[ENA]
¢þ
>C181001741
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
900912
900842
-
Cys
GCA
-
¡û
>C191044512
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
298594
298664
+
Cys
GCA
-
¡û
>C191079305
CP031733
Bacillota
Streptococcus chenjunshii Z15 [CP031733]
258598
258528
-
Cys
GCA
-
¡û
>W1910583253
JXJV01000023
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
26791
26861
+
Cys
GCA
[ENA]
¡û
>W1910583270
JXJW01000001
Bacillota
Lactococcus piscium DSM 6634 [JXJW]
26502
26572
+
Cys
GCA
[ENA]
¡û
>W1910583313
JXJX01000002
Bacillota
Lactococcus plantarum DSM 20686 [JXJX]
57261
57191
-
Cys
GCA
[ENA]
¡û
>W1910641557
LTDA01000011
Bacillota
Lactococcus garvieae KS1546 [LTDA]
310569
310639
+
Cys
GCA
[ENA]
¡û
>W1911494580
OBKP01000005
Bacillota
Lactococcus piscium CMTALT17 [OBKP]
53792
53862
+
Cys
GCA
[ENA]
¡û
>W1911532471
OGVB01000034
Bacillota
Lactococcus piscium CMTALT02 [OGVB]
57231
57301
+
Cys
GCA
[ENA]
¡û
>W1810907543
QVHV01000001
Bacillota
Lactococcus petauri AM13-9 [QVHV]
137546
137476
-
Cys
GCA
[ENA]
¡û
>W1810915153
QVQZ01000003
Bacillota
Streptococcus chenjunshii Z1(2018) [QVQZ]
48576
48646
+
Cys
GCA
[ENA]
¡û
>C151104020
LN774769
Bacillota
Lactococcus piscium MKFS47 [LN774769]
562010
562080
+
Cys
GCA
[Ensembl]
¡û
>W1510060343
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
878257
878187
-
Cys
GCA
[ENA]
¡û
>C11112682
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
298527
298597
+
Cys
GCA
[Ensembl]
¡û
>W1511314668
JPUJ01000003
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
112855
112925
+
Cys
GCA
[ENA]
¡û
>W11157431
AFCC01000002
Bacillota
Lactococcus garvieae 21881 [AFCC]
8690
8620
-
Cys
GCA
[ENA]
¡û
>W11157514
AFCD01000056
Bacillota
Lactococcus garvieae 8831 [AFCD]
28341
28411
+
Cys
GCA
[ENA]
¡û
>W11162779
AFHF01000021
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
9688
9618
-
Cys
GCA
[ENA]
¡û
>C161076195
CP014699
Bacillota
Streptococcus pantholopis TA 26 [CP014699]
1926370
1926440
+
Cys
GCA
[Ensembl]
¡û
>W121016370
AGQX01000087
Bacillota
Lactococcus garvieae TB25 [AGQX]
31624
31554
-
Cys
GCA
[ENA]
¡û
>W121016395
AGQY01000024
Bacillota
Lactococcus garvieae LG9 [AGQY]
105
35
-
Cys
GCA
[ENA]
¡û
>W121081202
AKFO01000008
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
289858
289928
+
Cys
GCA
[ENA]
¡û
>W1610072960
BCVM01000017
Bacillota
Lactococcus plantarum NBRC 100936 [BCVM]
18824
18894
+
Cys
GCA
[ENA]
¡û
>W1610514185
FLZT01000002
Bacillota
Lactococcus piscium CNCM I-4031 [FLZT]
190113
190183
+
Cys
GCA
[ENA]
¡û
>W1610856892
LQOE01000074
Bacillota
Lactococcus sp. DD01 [LQOE]
57928
57858
-
Cys
GCA
[ENA]
¡û
>W1611012220
LXWL01000001
Bacillota
Lactococcus garvieae [LXWL]
305364
305434
+
Cys
GCA
[ENA]
¡û
>W1710070078
BCVM01000017
Bacillota
Lactococcus plantarum NBRC 100936 [BCVM]
18824
18894
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK