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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.429234 (120 seq.)
>C171131218
LT821227
Actinomycetota
Phoenicibacter congonensis Marseille-P3241 [LT821227]
406151
406078
-
Gln
CTG
-
¡û
>WENV180128988
OATB01011378
[OATB] human gut metagenome; faeces
371
298
-
Gln
CTG
[ENA]
¢þ
>WENV180203729
OBAG01039259
[OBAG] human gut metagenome; human gut
297
224
-
Gln
CTG
[ENA]
¢þ
>WENV180326359
OBKS01059700
[OBKS] human gut metagenome; human gut
219
292
+
Gln
CTG
[ENA]
¢þ
>WENV180419416
OBVM01005989
[OBVM] human gut metagenome; faeces
416
489
+
Gln
CTG
[ENA]
¢þ
>WENV180439035
OBWS01004698
[OBWS] human gut metagenome; faeces
456
529
+
Gln
CTG
[ENA]
¢þ
>WENV180443770
OBWY01062951
[OBWY] human gut metagenome; faeces
75
148
+
Gln
CTG
[ENA]
¢þ
>WENV180470890
OBYO01001791
[OBYO] human gut metagenome; faeces
1803
1730
-
Gln
CTG
[ENA]
¢þ
>WENV180490608
OBZU01005491
[OBZU] human gut metagenome; faeces
1237
1164
-
Gln
CTG
[ENA]
¢þ
>WENV180601091
OCPQ01006201
[OCPQ] human gut metagenome; faeces
293
366
+
Gln
CTG
[ENA]
¢þ
>WENV180649703
OCSK01115563
[OCSK] human gut metagenome; human gut
278
205
-
Gln
CTG
[ENA]
¢þ
>WENV181241061
OFFE01052329
[OFFE] mouse gut metagenome; faeces
446
519
+
Gln
CTG
[ENA]
¢þ
>WENV181243235
OFFG01033483
[OFFG] mouse gut metagenome; faeces
274
201
-
Gln
CTG
[ENA]
¢þ
>WENV181261391
OFFX01031340
[OFFX] mouse gut metagenome; faeces
267
194
-
Gln
CTG
[ENA]
¢þ
>WENV181262868
OFFY01052367
[OFFY] mouse gut metagenome; faeces
214
141
-
Gln
CTG
[ENA]
¢þ
>WENV181302102
OFHO01004138
[OFHO] mouse gut metagenome; faeces
7342
7415
+
Gln
CTG
[ENA]
¢þ
>WENV181329043
OFLV01006583
[OFLV] metagenome; faeces
598
671
+
Gln
CTG
[ENA]
¢þ
>WENV181434400
OGDF01000707
[OGDF] human gut metagenome; human gut
2164
2091
-
Gln
CTG
[ENA]
¢þ
>WENV181436792
OGDF01031499
[OGDF] human gut metagenome; human gut
2492
2565
+
Gln
CTG
[ENA]
¢þ
>WENV181682815
OGOU01023573
[OGOU] human gut metagenome; faeces
1283
1356
+
Gln
CTG
[ENA]
¢þ
>WENV181723369
OGPW01004808
[OGPW] human gut metagenome; faeces
3128
3201
+
Gln
CTG
[ENA]
¢þ
>WENV181800996
OGRZ01001342
[OGRZ] human gut metagenome; fecal sample 1 from infant 2
208
281
+
Gln
CTG
[ENA]
¢þ
>WENV181813206
OGTB01042517
[OGTB] human gut metagenome; faeces
544
471
-
Gln
CTG
[ENA]
¢þ
>WENV181817629
OGTN01001823
[OGTN] human gut metagenome; fecal sample 5 from infant 4
1812
1739
-
Gln
CTG
[ENA]
¢þ
>WENV181883229
OGXI01002786
[OGXI] human gut metagenome; faeces
2825
2752
-
Gln
CTG
[ENA]
¢þ
>WENV181919916
OGYI01005303
[OGYI] human gut metagenome; faeces
2732
2805
+
Gln
CTG
[ENA]
¢þ
>WENV181994429
OHAS01042204
[OHAS] human gut metagenome; faeces
933
1006
+
Gln
CTG
[ENA]
¢þ
>WENV182002054
OHAY01057089
[OHAY] human gut metagenome; faeces
563
636
+
Gln
CTG
[ENA]
¢þ
>WENV182034619
OHCY01022355
[OHCY] human gut metagenome; feces
189
116
-
Gln
CTG
[ENA]
¢þ
>WENV182229561
OHRI01033319
[OHRI] human gut metagenome; feces
128
201
+
Gln
CTG
[ENA]
¢þ
>WENV182251169
OHST01007835
[OHST] human gut metagenome; feces
1090
1017
-
Gln
CTG
[ENA]
¢þ
>WENV182272013
OHUG01002476
[OHUG] human gut metagenome; feces
1479
1406
-
Gln
CTG
[ENA]
¢þ
>WENV182299583
OHWK01017853
[OHWK] human gut metagenome; feces
699
626
-
Gln
CTG
[ENA]
¢þ
>WENV182337540
OHZW01013612
[OHZW] human gut metagenome; feces
95
22
-
Gln
CTG
[ENA]
¢þ
>WENV182349759
OIBC01018383
[OIBC] human gut metagenome; feces
537
464
-
Gln
CTG
[ENA]
¢þ
>WENV182350708
OIBF01019211
[OIBF] human gut metagenome; feces
748
675
-
Gln
CTG
[ENA]
¢þ
>WENV182362309
OICD01016354
[OICD] human gut metagenome; feces
1315
1388
+
Gln
CTG
[ENA]
¢þ
>WENV182518987
OIWP01003486
[OIWP] human gut metagenome; faeces
7193
7266
+
Gln
CTG
[ENA]
¢þ
>WENV182538741
OIXV01000146
[OIXV] human gut metagenome; faeces
66479
66552
+
Gln
CTG
[ENA]
¢þ
>WENV182538862
OIXV01000390
[OIXV] human gut metagenome; faeces
39906
39979
+
Gln
CTG
[ENA]
¢þ
>WENV182674477
OJNP01027046
[OJNP] human gut metagenome; human gut
150
223
+
Gln
CTG
[ENA]
¢þ
>WENV182873443
OKRW01000431
[OKRW] human gut metagenome; faeces
41856
41929
+
Gln
CTG
[ENA]
¢þ
>WENV182889139
OKSE01045949
[OKSE] human gut metagenome; faeces
129
56
-
Gln
CTG
[ENA]
¢þ
>WENV182951854
OKVV01000212
[OKVV] human gut metagenome; human gut
2351
2424
+
Gln
CTG
[ENA]
¢þ
>WENV183034216
OLFY01076583
[OLFY] human gut metagenome; faeces
99
26
-
Gln
CTG
[ENA]
¢þ
>WENV183035872
OLFZ01068259
[OLFZ] human gut metagenome; faeces
403
476
+
Gln
CTG
[ENA]
¢þ
>WENV183099335
OLNF01006310
[OLNF] human gut metagenome; faeces
7159
7232
+
Gln
CTG
[ENA]
¢þ
>WENV183109133
OLNN01002246
[OLNN] human gut metagenome; faeces
10992
11065
+
Gln
CTG
[ENA]
¢þ
>WENV183109929
OLNN01038499
[OLNN] human gut metagenome; faeces
74
1
-
Gln
CTG
[ENA]
¢þ
>WENV183113289
OLNP01009561
[OLNP] human gut metagenome; faeces
3242
3315
+
Gln
CTG
[ENA]
¢þ
>WENV183119346
OLNT01006520
[OLNT] human gut metagenome; faeces
2113
2186
+
Gln
CTG
[ENA]
¢þ
>WENV183119410
OLNT01009314
[OLNT] human gut metagenome; faeces
144
71
-
Gln
CTG
[ENA]
¢þ
>WENV183121706
OLNV01002050
[OLNV] human gut metagenome; faeces
11844
11917
+
Gln
CTG
[ENA]
¢þ
>WENV183129110
OLNZ01050500
[OLNZ] human gut metagenome; faeces
121
48
-
Gln
CTG
[ENA]
¢þ
>WENV183132373
OLOB01001403
[OLOB] human gut metagenome; faeces
13846
13919
+
Gln
CTG
[ENA]
¢þ
>WENV183140547
OLOJ01000008
[OLOJ] human gut metagenome; faeces
36762
36689
-
Gln
CTG
[ENA]
¢þ
>WENV183141617
OLOJ01006642
[OLOJ] human gut metagenome; faeces
3256
3183
-
Gln
CTG
[ENA]
¢þ
>WENV183167970
OLOZ01002285
[OLOZ] human gut metagenome; faeces
2118
2045
-
Gln
CTG
[ENA]
¢þ
>WENV183169587
OLPA01005555
[OLPA] human gut metagenome; faeces
2545
2472
-
Gln
CTG
[ENA]
¢þ
>WENV183174773
OLPE01011083
[OLPE] human gut metagenome; faeces
1258
1185
-
Gln
CTG
[ENA]
¢þ
>WENV183177032
OLPG01000143
[OLPG] human gut metagenome; faeces
28569
28496
-
Gln
CTG
[ENA]
¢þ
>WENV183178066
OLPG01018714
[OLPG] human gut metagenome; faeces
74
1
-
Gln
CTG
[ENA]
¢þ
>WENV183181611
OLPI01011532
[OLPI] human gut metagenome; faeces
734
807
+
Gln
CTG
[ENA]
¢þ
>WENV183184178
OLPL01030952
[OLPL] human gut metagenome; faeces
590
663
+
Gln
CTG
[ENA]
¢þ
>WENV183186410
OLPO01000400
[OLPO] human gut metagenome; faeces
35990
36063
+
Gln
CTG
[ENA]
¢þ
>WENV183189712
OLPQ01007067
[OLPQ] human gut metagenome; faeces
921
994
+
Gln
CTG
[ENA]
¢þ
>WENV183189957
OLPQ01028696
[OLPQ] human gut metagenome; faeces
733
806
+
Gln
CTG
[ENA]
¢þ
>WENV183197047
OLPU01011281
[OLPU] human gut metagenome; faeces
2724
2651
-
Gln
CTG
[ENA]
¢þ
>WENV183203961
OLPY01006824
[OLPY] human gut metagenome; faeces
2253
2180
-
Gln
CTG
[ENA]
¢þ
>WENV183204119
OLPY01014155
[OLPY] human gut metagenome; faeces
174
247
+
Gln
CTG
[ENA]
¢þ
>WENV183214055
OLQE01001103
[OLQE] human gut metagenome; faeces
16165
16238
+
Gln
CTG
[ENA]
¢þ
>WENV183214366
OLQE01008208
[OLQE] human gut metagenome; faeces
74
1
-
Gln
CTG
[ENA]
¢þ
>WENV183228785
OLQR01003961
[OLQR] human gut metagenome; faeces
148
75
-
Gln
CTG
[ENA]
¢þ
>WENV183244148
OLRD01006685
[OLRD] human gut metagenome; faeces
275
202
-
Gln
CTG
[ENA]
¢þ
>WENV183254621
OLRJ01005872
[OLRJ] human gut metagenome; faeces
2347
2274
-
Gln
CTG
[ENA]
¢þ
>WENV183254840
OLRJ01015402
[OLRJ] human gut metagenome; faeces
2151
2224
+
Gln
CTG
[ENA]
¢þ
>WENV183261955
OLRQ01000291
[OLRQ] human gut metagenome; faeces
20321
20394
+
Gln
CTG
[ENA]
¢þ
>WENV183282378
OLSC01002314
[OLSC] human gut metagenome; faeces
2676
2603
-
Gln
CTG
[ENA]
¢þ
>WENV183291629
OLSI01004739
[OLSI] human gut metagenome; faeces
1312
1239
-
Gln
CTG
[ENA]
¢þ
>WENV183291881
OLSI01033067
[OLSI] human gut metagenome; faeces
99
26
-
Gln
CTG
[ENA]
¢þ
>WENV183292612
OLSJ01002919
[OLSJ] human gut metagenome; faeces
5219
5292
+
Gln
CTG
[ENA]
¢þ
>WENV183297770
OLSM01009211
[OLSM] human gut metagenome; faeces
1415
1342
-
Gln
CTG
[ENA]
¢þ
>WENV183313348
OLVP01026980
[OLVP] human gut metagenome; faeces
616
689
+
Gln
CTG
[ENA]
¢þ
>WENV183321557
OLVW01051447
[OLVW] human gut metagenome; faeces
204
131
-
Gln
CTG
[ENA]
¢þ
>WENV183322360
OLVX01001749
[OLVX] human gut metagenome; faeces
5870
5943
+
Gln
CTG
[ENA]
¢þ
>WENV183328962
OLWA01072956
[OLWA] human gut metagenome; faeces
565
638
+
Gln
CTG
[ENA]
¢þ
>WENV183338250
OLWJ01048999
[OLWJ] human gut metagenome; feces
18
91
+
Gln
CTG
[ENA]
¢þ
>WENV183345525
OLWR01002373
[OLWR] human gut metagenome; feces
4192
4265
+
Gln
CTG
[ENA]
¢þ
>WENV183354980
OLXC01030970
[OLXC] human gut metagenome; feces
456
529
+
Gln
CTG
[ENA]
¢þ
>WENV183362943
OLXK01054356
[OLXK] human gut metagenome; feces
620
547
-
Gln
CTG
[ENA]
¢þ
>WENV183372105
OLXW01000844
[OLXW] human gut metagenome; feces
2840
2767
-
Gln
CTG
[ENA]
¢þ
>WENV183372559
OLXW01031521
[OLXW] human gut metagenome; feces
158
85
-
Gln
CTG
[ENA]
¢þ
>WENV183472309
OMEQ01003151
[OMEQ] human gut metagenome; feces
204
277
+
Gln
CTG
[ENA]
¢þ
>WENV183497644
OMGN01011821
[OMGN] human gut metagenome; feces
1541
1468
-
Gln
CTG
[ENA]
¢þ
>WENV183505892
OMGX01069755
[OMGX] human gut metagenome; human gut
420
347
-
Gln
CTG
[ENA]
¢þ
>WENV183557808
OOBP01008117
[OOBP] human gut metagenome; human gut
1809
1882
+
Gln
CTG
[ENA]
¢þ
>WENV183560232
OOBT01011517
[OOBT] human gut metagenome; human gut
1394
1321
-
Gln
CTG
[ENA]
¢þ
>WENV183565898
OOBZ01044282
[OOBZ] human gut metagenome; human gut
895
968
+
Gln
CTG
[ENA]
¢þ
>WENV170544191
CXRG01000211
[CXRG] human gut metagenome genome assembly hE6, contig hE6_contig001993.; ENVO:feces
5149
5076
-
Gln
CTG
[ENA]
¢þ
>C181221139
LT900217
Actinomycetota
Gordonibacter urolithinfaciens DSM 27213T [LT900217]
515629
515702
+
Gln
CTG
-
¡û
>C191209616
LR134379
Actinomycetota
Slackia heliotrinireducens NCTC11029 [LR134379]
924758
924831
+
Gln
CTG
-
¡û
>W09134671
ACUX01000009
Actinomycetota
Slackia exigua ATCC 700122 [ACUX]
125621
125694
+
Gln
CTG
[ENA]
¡û
>W1910439689
FWDJ01000001
Actinomycetota
Arabiibacter massiliensis Marseille-P3078 [FWDJ]
21150
21223
+
Gln
CTG
[ENA]
¡û
>W1911679864
QIBV01000033
Actinomycetota
Gordonibacter urolithinfaciens JCM 16058 [QIBV]
2918
2991
+
Gln
CTG
[ENA]
¡û
>W1911679986
QIBY01000011
Actinomycetota
Parvibacter caecicola DSM 22242 [QIBY]
50453
50380
-
Gln
CTG
[ENA]
¡û
>W1911680115
QICA01000028
Actinomycetota
Adlercreutzia equolifaciens DSM 18785 [QICA]
14951
15024
+
Gln
CTG
[ENA]
¡û
>W1810234452
PPEK01000010
Actinomycetota
Enteroscipio rubneri ResAG-96 [PPEK]
3244
3317
+
Gln
CTG
[ENA]
¡û
>W1810241213
PPUA01000006
Actinomycetota
Eggerthella lenta DSM 2243 [PPUA]
2832
2905
+
Gln
CTG
[ENA]
¡û
>W1810241300
PPUC01000001
Actinomycetota
Eggerthella lenta DSM 11863 [PPUC]
281671
281598
-
Gln
CTG
[ENA]
¡û
>W1810241358
PPUD01000007
Actinomycetota
Eggerthella lenta DSM 11767 [PPUD]
2906
2979
+
Gln
CTG
[ENA]
¡û
>W1810241443
PPUF01000003
Actinomycetota
Eggerthella lenta CC8/2 BHI2 [PPUF]
2648
2721
+
Gln
CTG
[ENA]
¡û
>W1810241502
PPUG01000008
Actinomycetota
Eggerthella lenta CC7/5 D5 2 [PPUG]
128950
128877
-
Gln
CTG
[ENA]
¡û
>W1810241936
PPUP01000012
Actinomycetota
Eggerthella lenta 19C [PPUP]
130192
130119
-
Gln
CTG
[ENA]
¡û
>W1810242115
PPUT01000015
Actinomycetota
Adlercreutzia equolifaciens OB21 GAM 11 [PPUT]
66270
66343
+
Gln
CTG
[ENA]
¡û
>W1810242175
PPUU01000009
Actinomycetota
Adlercreutzia equolifaciens AP38TSA [PPUU]
2698
2625
-
Gln
CTG
[ENA]
¡û
>W1810837308
QSSL01000001
Actinomycetota
Eggerthella lenta TF05-26B-4 [QSSL]
287151
287078
-
Gln
CTG
[ENA]
¡û
>W1810914306
QVOJ01000024
Actinomycetota
Adlercreutzia equolifaciens KCTC 15235 [QVOJ]
3081
3008
-
Gln
CTG
[ENA]
¡û
>C151048627
CP009302
Actinomycetota
Berryella intestinalis 68-1-3 [CP009302]
1369403
1369476
+
Gln
CTG
[Ensembl]
¡û
>W11152006
AEXR01000007
Actinomycetota
Eggerthella sp. HGA1 [AEXR]
294186
294113
-
Gln
CTG
[ENA]
¡û
>C161103611
FP929047
Actinomycetota
Gordonibacter pamelaeae 7-10-1-b 7-10-1-bT [FP929047]
2071238
2071311
+
Gln
CTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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