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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.429429 (49 seq.)
>W1710867347
LMIE01000032
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
76421
76347
-
Val
CAC
[ENA]
¡û
>W131178103
ARLH01000090
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
132298
132372
+
Val
CAC
[ENA]
¡û
>W1711167240
LVWD01000013
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
501312
501238
-
Val
CAC
[ENA]
¡û
>W1711343211
MCIC01000014
Betaproteobacteria
Hydrogenophaga sp. H7 [MCIC]
175470
175544
+
Val
CAC
[ENA]
¡û
>W1711385299
MEEA01000173
Betaproteobacteria
Hydrogenophaga sp. SCN 70-13 [MEEA]
6470
6544
+
Val
CAC
[ENA]
¡û
>W1711394845
MERT01000006
Betaproteobacteria
Burkholderiales bacterium GWF1_66_17 [MERT]
231249
231175
-
Val
CAC
[ENA]
¡û
>W1711453646
MIYM01000001
Betaproteobacteria
Hydrogenophaga sp. PML113 [MIYM]
698077
698151
+
Val
CAC
[ENA]
¡û
>W1712049918
NFUT01000001
Betaproteobacteria
Hydrogenophaga sp. IBVHS2 [NFUT]
787894
787968
+
Val
CAC
[ENA]
¡û
>W1712049971
NFUU01000001
Betaproteobacteria
Hydrogenophaga sp. IBVHS1 [NFUU]
2076126
2076052
-
Val
CAC
[ENA]
¡û
>W1712102998
NIOG01000001
Betaproteobacteria
Roseateles terrae [NIOG]
415198
415272
+
Val
CAC
[ENA]
¡û
>C171049800
CP016449
Betaproteobacteria
Hydrogenophaga sp. RAC07 [CP016449]
2101351
2101277
-
Val
CAC
-
¡û
>C171060626
CP017311
Betaproteobacteria
Hydrogenophaga sp. PBC [CP017311]
2817616
2817542
-
Val
CAC
-
¡û
>C171063219
CP017476
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [CP017476]
2877136
2877062
-
Val
CAC
-
¡û
>WENV180357337
OBNN01003240
[OBNN] marine metagenome; Coastal water
627
553
-
Val
CAC
[ENA]
¢þ
>WENV180395732
OBPT01101377
[OBPT] marine metagenome; ENVO:00002010 seawater
158
84
-
Val
CAC
[ENA]
¢þ
>WENV180591146
OCOV01000697
[OCOV] marine metagenome; ENVO:01000301
1472
1546
+
Val
CAC
[ENA]
¢þ
>WENV181379974
OFRD01018344
[OFRD] wastewater metagenome; Exp Tend CN 100WW
99
173
+
Val
CAC
[ENA]
¢þ
>WENV181416269
OGCL01066272
[OGCL] hot springs metagenome; Hot spring water
885
959
+
Val
CAC
[ENA]
¢þ
>W141214293
AZSO01000206
Betaproteobacteria
Hydrogenophaga sp. T4 [AZSO]
1415
1341
-
Val
CAC
[ENA]
¡û
>W141260628
CCAE010000017
Betaproteobacteria
Hydrogenophaga intermedia [CCAE]
59155
59081
-
Val
CAC
[ENA]
¡û
>WENV183687171
ORMF011106507
[ORMF] groundwater metagenome; groundwater
460
386
-
Val
CAC
[ENA]
¢þ
>WENV170639635
JFJP01005507
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
18139
18213
+
Val
CAC
[ENA]
¢þ
>WENV170639646
JFJP01005604
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
20167
20241
+
Val
CAC
[ENA]
¢þ
>C191154124
CP037867
Betaproteobacteria
Hydrogenophaga pseudoflava DSM 1084 [CP037867]
3070195
3070121
-
Val
CAC
-
¡û
>C191163911
CP039252
Betaproteobacteria
Hydrogenophaga sp. PAMC20947 [CP039252]
1476777
1476703
-
Val
CAC
-
¡û
>W1910699833
MERX01000351
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_66_10 [MERX]
5186
5260
+
Val
CAC
[ENA]
¡û
>W1910700165
MESG01000140
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_67_64 [MESG]
14099
14025
-
Val
CAC
[ENA]
¡û
>W1910700175
MESH01000001
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_67_14 [MESH]
15330
15404
+
Val
CAC
[ENA]
¡û
>W1810273322
PSNY01000014
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [PSNY]
35831
35757
-
Val
CAC
[ENA]
¡û
>W1810596767
QGGT01000001
Betaproteobacteria
Cupriavidus plantarum SLV-132 [QGGT]
762790
762716
-
Val
CAC
[ENA]
¡û
>W1810762726
QQAP01000001
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [QQAP]
400855
400929
+
Val
CAC
[ENA]
¡û
>W1810861198
QTTS01000001
Betaproteobacteria
Cupriavidus plantarum MA1-2za [QTTS]
1338340
1338414
+
Val
CAC
[ENA]
¡û
>W1810884617
QUMT01000001
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
1689494
1689568
+
Val
CAC
[ENA]
¡û
>W1810912356
QVLS01000012
Betaproteobacteria
Hydrogenophaga borbori LA-38 [QVLS]
112368
112442
+
Val
CAC
[ENA]
¡û
>ENV09003480
ADGO01060840
Compost metagenome contig00001
299
373
+
Val
CAC
[ENA]
¡û
>WENV033769
AACY021553571
Marine microbial communities from Global Ocean Sampling (GOS)
640
564
-
Val
CAC
[ENA]
>C161059533
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
1461408
1461482
+
Val
CAC
[Ensembl]
¡û
>C161060311
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
3478689
3478615
-
Val
CAC
[Ensembl]
¡û
>W121070102
AJWL01000007
Betaproteobacteria
Hydrogenophaga sp. PBC [AJWL]
59097
59023
-
Val
CAC
[ENA]
¡û
>W1610070522
BCTI01000003
Betaproteobacteria
Hydrogenophaga intermedia NBRC 102510 [BCTI]
106664
106738
+
Val
CAC
[ENA]
¡û
>W1610074131
BCWK01000009
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
103311
103237
-
Val
CAC
[ENA]
¡û
>W1610074392
BCWQ01000002
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
187373
187299
-
Val
CAC
[ENA]
¡û
>W1610074431
BCWR01000005
Betaproteobacteria
Hydrogenophaga taeniospiralis NBRC 102512 [BCWR]
66863
66937
+
Val
CAC
[ENA]
¡û
>W1610729693
LMIE01000032
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
76421
76347
-
Val
CAC
[ENA]
¡û
>W1610977571
LVWD01000013
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
501312
501238
-
Val
CAC
[ENA]
¡û
>W1710067895
BCTI01000003
Betaproteobacteria
Hydrogenophaga intermedia NBRC 102510 [BCTI]
106664
106738
+
Val
CAC
[ENA]
¡û
>W1710071249
BCWK01000009
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
103311
103237
-
Val
CAC
[ENA]
¡û
>W1710071510
BCWQ01000002
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
187373
187299
-
Val
CAC
[ENA]
¡û
>W1710071549
BCWR01000005
Betaproteobacteria
Hydrogenophaga taeniospiralis NBRC 102512 [BCWR]
66863
66937
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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