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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.429518 (36 seq.)
>C005871
CP000141
Bacillota
Carboxydothermus hydrogenoformans Z-2901 [CP000141]
278160
278233
+
Gly
TCC
[Ensembl]
¡û
>WENV183704710
PDWI01000535
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
48445
48372
-
Gly
TCC
[ENA]
¢þ
>WENV183706064
PDWI01003018
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
17509
17582
+
Gly
TCC
[ENA]
¢þ
>WENV183706571
PDWI01004723
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
17866
17793
-
Gly
TCC
[ENA]
¢þ
>WENV183707201
PDWI01007263
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
110
183
+
Gly
TCC
[ENA]
¢þ
>WENV183707226
PDWI01007479
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
202
275
+
Gly
TCC
[ENA]
¢þ
>WENV183707870
PDWI01011205
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
765
692
-
Gly
TCC
[ENA]
¢þ
>WENV183707886
PDWI01011283
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3548
3475
-
Gly
TCC
[ENA]
¢þ
>WENV183709706
PDWI01032303
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
98
25
-
Gly
TCC
[ENA]
¢þ
>WENV183711077
PDWI01060712
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
136
209
+
Gly
TCC
[ENA]
¢þ
>WENV183711662
PDWI01075675
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2316
2389
+
Gly
TCC
[ENA]
¢þ
>WENV183712852
PDWI01116240
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
243
170
-
Gly
TCC
[ENA]
¢þ
>WENV183713631
PDWI01146066
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
74
1
-
Gly
TCC
[ENA]
¢þ
>WENV183714538
PDWI01189595
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
288
361
+
Gly
TCC
[ENA]
¢þ
>WENV183715071
PDWI01219963
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
286
213
-
Gly
TCC
[ENA]
¢þ
>WENV183715413
PDWI01239411
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
557
630
+
Gly
TCC
[ENA]
¢þ
>WENV183717550
PDWJ01001108
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
39756
39829
+
Gly
TCC
[ENA]
¢þ
>WENV183718305
PDWJ01003304
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
20523
20596
+
Gly
TCC
[ENA]
¢þ
>WENV183718800
PDWJ01006630
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8927
8854
-
Gly
TCC
[ENA]
¢þ
>WENV183718885
PDWJ01007430
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
122
195
+
Gly
TCC
[ENA]
¢þ
>WENV183718964
PDWJ01008161
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
202
275
+
Gly
TCC
[ENA]
¢þ
>WENV183719123
PDWJ01009919
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
240
167
-
Gly
TCC
[ENA]
¢þ
>WENV183719751
PDWJ01019758
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2619
2546
-
Gly
TCC
[ENA]
¢þ
>WENV183720679
PDWJ01041383
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
463
390
-
Gly
TCC
[ENA]
¢þ
>WENV183721612
PDWJ01077373
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
555
628
+
Gly
TCC
[ENA]
¢þ
>WENV170686324
LFRM01138895
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1012
1084
+
Gly
TCC
[ENA]
¢þ
>W1910665494
MCIB01000031
Bacillota
Thermohalobacter berrensis CTT3 [MCIB]
3867
3794
-
Gly
TCC
[ENA]
¡û
>W1910665499
MCIB01000039
Bacillota
Thermohalobacter berrensis CTT3 [MCIB]
24138
24065
-
Gly
TCC
[ENA]
¡û
>W121010862
AGJQ01000005
Bacillota
Desulfoscipio gibsoniae DSM 7213 [AGJQ]
145109
145182
+
Gly
TCC
[ENA]
¡û
>WENV068970
AACY023746164
Marine microbial communities from Global Ocean Sampling (GOS)
1233
1306
+
Gly
TCC
[ENA]
>C131003062
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
997792
997865
+
Gly
TCC
[Ensembl]
¡û
>C131003074
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
1008778
1008851
+
Gly
TCC
[Ensembl]
¡û
>C131003091
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
1010465
1010538
+
Gly
TCC
[Ensembl]
¡û
>C131003110
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
3016567
3016494
-
Gly
TCC
[Ensembl]
¡û
>W1710083618
BDJL01000141
Bacillota
Carboxydothermus islandicus [BDJL]
20099
20172
+
Gly
TCC
[ENA]
¡û
>W1710562353
FOOX01000001
Bacillota
Desulfotruncus arcticus arcticum [FOOX]
382498
382425
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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