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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.429609 (79 seq.)
>W1711328968
MBLO01000251
Actinomycetota
Pseudofrankia sp. BMG5.36 BMG5.36 [MBLO]
25839
25767
-
Cys
GCA
[ENA]
¡û
>W1711343454
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
1402361
1402433
+
Cys
GCA
[ENA]
¡û
>W1711343582
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
4065961
4065889
-
Cys
GCA
[ENA]
¡û
>W1711343676
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
3034701
3034773
+
Cys
GCA
[ENA]
¡û
>W1711343901
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
4115755
4115827
+
Cys
GCA
[ENA]
¡û
>W1711427969
MIGB01000030
Actinomycetota
Pseudonocardia autotrophica [MIGB]
9813
9885
+
Cys
GCA
[ENA]
¡û
>W1711491766
MKJV01000121
Actinomycetota
Pseudonocardia sp. CNS-004 [MKJV]
37434
37362
-
Cys
GCA
[ENA]
¡û
>W1711694630
MSIE01000001
Actinomycetota
Actinophytocola xanthii 11-183 [MSIE]
302297
302369
+
Cys
GCA
[ENA]
¡û
>W1711724919
MTQO01000054
Actinomycetota
Actinosynnema sp. ALI-1.44 [MTQO]
1179695
1179767
+
Cys
GCA
[ENA]
¡û
>W1711749133
MUMG01000278
Actinomycetota
Crossiella equi [MUMG]
4025
3953
-
Cys
GCA
[ENA]
¡û
>W131158660
AQUI01000002
Actinomycetota
Actinopolyspora halophila DSM 43834 [AQUI]
4000060
3999988
-
Cys
GCA
[ENA]
¡û
>W131164581
ARAX01000001
Actinomycetota
Sciscionella marina DSM 45152 [ARAX]
537988
537916
-
Cys
GCA
[ENA]
¡û
>W131170902
ARFV01000017
Actinomycetota
Actinokineospora enzanensis DSM 44649 [ARFV]
4982
4910
-
Cys
GCA
[ENA]
¡û
>W131222162
AUBB01000006
Actinomycetota
Pseudonocardia spinosispora DSM 44797 [AUBB]
239589
239661
+
Cys
GCA
[ENA]
¡û
>C000323
CP000481
Actinomycetota
Acidothermus cellulolyticus 11B 11B; ATCC 43068 [CP000481]
1524883
1524954
+
Cys
GCA
[Ensembl]
¡û
>C021617
AM420293
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [AM420293]
2142496
2142567
+
Cys
GCA
[Ensembl]
¡û
>WENV180304094
OBJH01029565
[OBJH] soil metagenome; soil
23
95
+
Cys
GCA
[ENA]
¢þ
>WENV180320440
OBKO01015530
[OBKO] soil metagenome; Alaskan Permafrost
77
149
+
Cys
GCA
[ENA]
¢þ
>WENV180342324
OBLJ01005687
[OBLJ] soil metagenome; Clay
4
76
+
Cys
GCA
[ENA]
¢þ
>WENV180343210
OBLK01000224
[OBLK] soil metagenome; Clay
5055
5127
+
Cys
GCA
[ENA]
¢þ
>WENV181166106
OEIS01461726
[OEIS] soil metagenome; soil
79
151
+
Cys
GCA
[ENA]
¢þ
>WENV181286149
OFGV01000940
[OFGV] soil metagenome; Clay
3096
3168
+
Cys
GCA
[ENA]
¢þ
>WENV181292790
OFHF01018087
[OFHF] soil metagenome; Clay
265
193
-
Cys
GCA
[ENA]
¢þ
>WENV181293544
OFHG01007454
[OFHG] soil metagenome; Clay
249
177
-
Cys
GCA
[ENA]
¢þ
>WENV181294337
OFHH01000255
[OFHH] soil metagenome; Clay
8700
8772
+
Cys
GCA
[ENA]
¢þ
>WENV181295467
OFHI01045259
[OFHI] soil metagenome; Clay
494
566
+
Cys
GCA
[ENA]
¢þ
>WENV181296850
OFHK01000758
[OFHK] soil metagenome; Clay
2303
2231
-
Cys
GCA
[ENA]
¢þ
>WENV181297824
OFHL01000029
[OFHL] soil metagenome; Clay
7048
6976
-
Cys
GCA
[ENA]
¢þ
>WENV181609217
OGLN01011553
[OGLN] metagenome; Human gut stool
1572
1644
+
Cys
GCA
[ENA]
¢þ
>WENV181634584
OGMW01006345
[OGMW] metagenome; Human gut stool
3076
3148
+
Cys
GCA
[ENA]
¢þ
>WENV181641973
OGNF01042617
[OGNF] metagenome; Human gut stool
153
81
-
Cys
GCA
[ENA]
¢þ
>W141170077
AXWW01000037
Actinomycetota
Actinokineospora inagensis DSM 44258 [AXWW]
12374
12446
+
Cys
GCA
[ENA]
¡û
>W141185608
AYJW01000111
Actinomycetota
Saccharopolyspora rectivirgula DSM 43747 [AYJW]
4085
4157
+
Cys
GCA
[ENA]
¡û
>W141199750
AYXG01000075
Actinomycetota
Actinokineospora spheciospongiae EG49 [AYXG]
12909
12981
+
Cys
GCA
[ENA]
¡û
>W141284072
JALM01000185
Actinomycetota
Sciscionella sp. SE31 [JALM]
1483
1555
+
Cys
GCA
[ENA]
¡û
>WENV183092699
OLLJ01000085
[OLLJ] soil metagenome; soil
7987
7915
-
Cys
GCA
[ENA]
¢þ
>WENV183093274
OLLX01000077
[OLLX] soil metagenome; soil
6167
6095
-
Cys
GCA
[ENA]
¢þ
>WENV170023708
BCQL01001450
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
4043
3971
-
Cys
GCA
[ENA]
¢þ
>WENV170648161
JRHI01000006
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
7895
7967
+
Cys
GCA
[ENA]
¢þ
>C181072173
CP022752
Actinomycetota
Actinopolyspora erythraea YIM 90600 [CP022752]
3566455
3566383
-
Cys
GCA
-
¡û
>C191005748
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
2630524
2630452
-
Cys
GCA
-
¡û
>W141563901
JIAI01000006
Actinomycetota
Pseudonocardia acaciae DSM 45401 [JIAI]
434076
434004
-
Cys
GCA
[ENA]
¡û
>W141754567
JNVU01000025
Actinomycetota
Saccharopolyspora rectivirgula [JNVU]
306382
306454
+
Cys
GCA
[ENA]
¡û
>W141757751
JNYD01000003
Actinomycetota
Pseudonocardia autotrophica [JNYD]
348293
348221
-
Cys
GCA
[ENA]
¡û
>W141758287
JNYM01001861
Actinomycetota
Kibdelosporangium aridum subsp. largum [JNYM]
129
57
-
Cys
GCA
[ENA]
¡û
>W141758825
JNYW01003414
Actinomycetota
Saccharopolyspora phatthalungensis [JNYW]
1531
1603
+
Cys
GCA
[ENA]
¡û
>W141760462
JOAA01000055
Actinomycetota
Rhodococcus rhodnii [JOAA]
6434
6362
-
Cys
GCA
[ENA]
¡û
>W141766811
JOEF01000010
Actinomycetota
Allokutzneria albata [JOEF]
166909
166981
+
Cys
GCA
[ENA]
¡û
>W1910038432
BEGX01000114
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
139341
139413
+
Cys
GCA
[ENA]
¡û
>W1910994856
NKYF01000010
Actinomycetota
Pseudonocardia sp. MH-G8 [NKYF]
124355
124283
-
Cys
GCA
[ENA]
¡û
>W1911572269
PDBV01000001
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 DSM 40517 [PDBV]
2522741
2522813
+
Cys
GCA
[ENA]
¡û
>W1911679535
QHKI01000090
Actinomycetota
Kibdelosporangium aridum A82846 [QHKI]
6463
6391
-
Cys
GCA
[ENA]
¡û
>W1911814586
QZFT01000045
Actinomycetota
Pseudonocardiaceae bacterium YIM PH 21723 [QZFT]
108444
108516
+
Cys
GCA
[ENA]
¡û
>W1810173463
PJNB01000001
Actinomycetota
Saccharopolyspora spinosa DSM 44228 [PJNB]
8172944
8172872
-
Cys
GCA
[ENA]
¡û
>W1810176397
PJPW02000075
Actinomycetota
Pseudonocardia dioxanivorans BERK-1 [PJPW]
40563
40491
-
Cys
GCA
[ENA]
¡û
>W1810363867
PVSR01000001
Actinomycetota
Actinopolyspora mortivallis M5A [PVSR]
185760
185832
+
Cys
GCA
[ENA]
¡û
>W1810573609
QEKW01000001
Actinomycetota
Actinomycetospora cinnamomea DSM 45771 [QEKW]
3983
4055
+
Cys
GCA
[ENA]
¡û
>W1810623455
QHCP01000005
Actinomycetota
Actinokineospora spheciospongiae CECT 8578 [QHCP]
190623
190695
+
Cys
GCA
[ENA]
¡û
>C151075018
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
1605442
1605370
-
Cys
GCA
-
¡û
>W1510073621
CDME01000008
Actinomycetota
Kibdelosporangium sp. MJ126-NF4 [CDME]
1287706
1287778
+
Cys
GCA
[ENA]
¡û
>C11117094
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
2171963
2171891
-
Cys
GCA
[Ensembl]
¡û
>W1511307045
JPMV01000025
Actinomycetota
Actinopolyspora erythraea YIM 90600 [JPMV]
78868
78940
+
Cys
GCA
[ENA]
¡û
>W1511573835
LANG01000011
Actinomycetota
Pseudofrankia sp. DC12 DC12 [LANG]
777479
777551
+
Cys
GCA
[ENA]
¡û
>W11152458
AEYC01000013
Actinomycetota
Saccharopolyspora spinosa NRRL 18395 [AEYC]
26244
26316
+
Cys
GCA
[ENA]
¡û
>C161040396
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
4893097
4893025
-
Cys
GCA
[Ensembl]
¡û
>C161045534
CP012752
Actinomycetota
Kibdelosporangium phytohabitans KLBMP1111 [CP012752]
9030160
9030088
-
Cys
GCA
[Ensembl]
¡û
>C161061277
CP013854
Actinomycetota
Pseudonocardia sp. HH130630-07 [CP013854]
252419
252491
+
Cys
GCA
[Ensembl]
¡û
>W1610050388
BBFU01000922
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
454
526
+
Cys
GCA
[ENA]
¡û
>W1710046787
BBFU01000922
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
454
526
+
Cys
GCA
[ENA]
¡û
>W1710513241
FMZZ01000018
Actinomycetota
Actinokineospora iranica iranicum [FMZZ]
107424
107496
+
Cys
GCA
[ENA]
¡û
>W1710525608
FNJR01000005
Actinomycetota
Actinopolyspora xinjiangensis [FNJR]
201179
201251
+
Cys
GCA
[ENA]
¡û
>W1710526761
FNKO01000001
Actinomycetota
Actinopolyspora saharensis [FNKO]
197556
197628
+
Cys
GCA
[ENA]
¡û
>W1710529965
FNOK01000003
Actinomycetota
Saccharopolyspora shandongensis [FNOK]
21349
21277
-
Cys
GCA
[ENA]
¡û
>W1710551751
FOGI01000006
Actinomycetota
Actinokineospora terrae [FOGI]
13166
13094
-
Cys
GCA
[ENA]
¡û
>W1710569677
FOUP01000006
Actinomycetota
Saccharopolyspora antimicrobica [FOUP]
82091
82019
-
Cys
GCA
[ENA]
¡û
>W1710570147
FOUY01000015
Actinomycetota
Pseudonocardia ammonioxydans [FOUY]
27428
27356
-
Cys
GCA
[ENA]
¡û
>W1710576271
FOZX01000001
Actinomycetota
Saccharopolyspora flava [FOZX]
208813
208741
-
Cys
GCA
[ENA]
¡û
>W1710584434
FQVN01000006
Actinomycetota
Streptoalloteichus hindustanus [FQVN]
471516
471444
-
Cys
GCA
[ENA]
¡û
>W1710606496
FWXV01000023
Actinomycetota
Kibdelosporangium aridum [FWXV]
44497
44425
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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