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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.429885 (13 seq.)
>A171000089
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
726421
726492
+
Val
GAC
-
¡û
>A171000898
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1128495
1128567
+
Val
GAC
-
¡û
>A171002039
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
1980132
1980061
-
Val
GAC
-
¡û
>A171007681
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
732307
732236
-
Val
GAC
-
¡û
>WENV180311453
OBJT01300014
[OBJT] soil metagenome; soil
166
239
+
Val
GAC
[ENA]
¢þ
>WENV170008113
AMZC01002101
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1307
1381
+
Val
GAC
[ENA]
¢þ
>At1652
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
749556
749627
+
Val
GAC
[Ensembl]
¡û
>W1910574908
JQJK01000007
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
392058
391987
-
Val
GAC
[ENA]
¡û
>W1910574952
JQKN01000002
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
189459
189530
+
Val
GAC
[ENA]
¡û
>W1910575116
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
512613
512540
-
Val
GAC
[ENA]
¡û
>W1910635119
LMVM01000001
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
351075
351004
-
Val
GAC
[ENA]
¡û
>W1910655449
LZPM01000018
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
251479
251408
-
Val
GAC
[ENA]
¡û
>W1610990674
LWMT01000138
Euryarchaeota
Methanobrevibacter filiformis DSM 11501 [LWMT]
11335
11406
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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