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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.430002 (6 seq.)
>WENV170782758
MAAC01011212
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
16073
15997
-
Met
CAT
[ENA]
¢þ
>WENV170782759
MAAC01011212
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
15935
15859
-
Met
CAT
[ENA]
¢þ
>WENV170782769
MAAC01011242
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
188691
188767
+
Met
CAT
[ENA]
¢þ
>WENV170782770
MAAC01011242
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
188826
188902
+
Met
CAT
[ENA]
¢þ
>WENV170782813
MAAC01011310
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
187034
187110
+
Met
CAT
[ENA]
¢þ
>WENV170782814
MAAC01011310
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
187168
187244
+
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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