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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.430732 (30 seq.)
>W131046813
AMSR01000012
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
238133
238206
+
Gly
CCC
[ENA]
¡û
>W1711074095
LSJF01000108
Alphaproteobacteria
Sphingomonas sp. CCH9-H8 [LSJF]
567
494
-
Gly
CCC
[ENA]
¡û
>C171115171
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
50562
50489
-
Gly
CCC
-
¡û
>WENV180016415
FSUX01000660
[FSUX] metagenome; soil
1581
1508
-
Gly
CCC
[ENA]
¢þ
>WENV180033986
FTKM01026000
[FTKM] metagenome; soil
84915
84988
+
Gly
CCC
[ENA]
¢þ
>WENV180082047
MPMC02178116
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
17323
17250
-
Gly
CCC
[ENA]
¢þ
>WENV180090635
MPMF02149421
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
2342
2269
-
Gly
CCC
[ENA]
¢þ
>WENV180269918
OBEQ012114735
[OBEQ] groundwater metagenome; groundwater
69
142
+
Gly
CCC
[ENA]
¢þ
>WENV182543989
OJBD01007330
[OJBD] seawater metagenome; Sea water
496
423
-
Gly
CCC
[ENA]
¢þ
>WENV183528863
ONZX01010905
[ONZX] human gut metagenome; human gut
781
708
-
Gly
CCC
[ENA]
¢þ
>C181088914
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1211979
1212052
+
Gly
CCC
-
¡û
>C181089241
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
1211978
1212051
+
Gly
CCC
-
¡û
>C191145588
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
1209577
1209650
+
Gly
CCC
-
¡û
>C191145639
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1209577
1209650
+
Gly
CCC
-
¡û
>W1910182410
BJMW01000006
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
50000
49927
-
Gly
CCC
[ENA]
¡û
>W1910182467
BJMX01000007
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
42904
42977
+
Gly
CCC
[ENA]
¡û
>C141008828
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
165634
165561
-
Gly
CCC
[Ensembl]
¡û
>C151004630
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
165409
165336
-
Gly
CCC
[Ensembl]
¡û
>C151004681
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
165409
165336
-
Gly
CCC
[Ensembl]
¡û
>SRA1052951
SRR035098.306978
454 Sequencing (SRP001819)
281
208
-
Gly
CCC
[SRA]
>C10114614
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
161378
161305
-
Gly
CCC
[Ensembl]
¡û
>C11124254
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
126045
125972
-
Gly
CCC
[Ensembl]
¡û
>C121003172
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
158825
158752
-
Gly
CCC
[Ensembl]
¡û
>W1610042592
BAXV01000010
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
66588
66661
+
Gly
CCC
[ENA]
¡û
>W1610071270
BCTY01000002
Alphaproteobacteria
Sphingomonas sanguinis NBRC 13937 [BCTY]
5370
5297
-
Gly
CCC
[ENA]
¡û
>W1610593004
LDTE01000086
Alphaproteobacteria
Sphingomonas sanguinis [LDTE]
43338
43265
-
Gly
CCC
[ENA]
¡û
>W1610913400
LSJF01000108
Alphaproteobacteria
Sphingomonas sp. CCH9-H8 [LSJF]
567
494
-
Gly
CCC
[ENA]
¡û
>W1710039686
BAXV01000010
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
66588
66661
+
Gly
CCC
[ENA]
¡û
>W1710068635
BCTY01000002
Alphaproteobacteria
Sphingomonas sanguinis NBRC 13937 [BCTY]
5370
5297
-
Gly
CCC
[ENA]
¡û
>W1710712284
LDTE01000086
Alphaproteobacteria
Sphingomonas sanguinis [LDTE]
43338
43265
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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