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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.430786 (39 seq.)
>W131186627
ARWG01000001
Alphaproteobacteria
Hyphomicrobium sp. 99 [ARWG]
977402
977328
-
Thr
TGT
[ENA]
¡û
>W131226710
AUEO01000043
Alphaproteobacteria
Caulobacter sp. URHA0033 [AUEO]
32683
32609
-
Thr
TGT
[ENA]
¡û
>W131230403
AUHO01000007
Alphaproteobacteria
Kaistia adipata DSM 17808 [AUHO]
828714
828640
-
Thr
TGT
[ENA]
¡û
>W1711489161
MKIO01000029
Alphaproteobacteria
Xaviernesmea rhizosphaerae MH17 [MKIO]
251057
251131
+
Thr
TGT
[ENA]
¡û
>W1712104771
NIPZ01000093
Alphaproteobacteria
Paracoccus yeei [NIPZ]
10970
11044
+
Thr
TGT
[ENA]
¡û
>C171057745
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
5087695
5087769
+
Thr
TGT
-
¡û
>WENV180020295
FTCZ01001293
[FTCZ] metagenome; soil
2389
2315
-
Thr
TGT
[ENA]
¢þ
>WENV180020488
FTCZ01004739
[FTCZ] metagenome; soil
9065
8991
-
Thr
TGT
[ENA]
¢þ
>WENV180584721
OCOJ01267441
[OCOJ] soil metagenome; soil
124
198
+
Thr
TGT
[ENA]
¢þ
>WENV181169409
OEIV010002308
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6782
6856
+
Thr
TGT
[ENA]
¢þ
>WENV181296274
OFHJ01020013
[OFHJ] soil metagenome; Clay
487
561
+
Thr
TGT
[ENA]
¢þ
>WENV181308201
OFIS01000658
[OFIS] sludge metagenome; sludge
4902
4976
+
Thr
TGT
[ENA]
¢þ
>WENV181311316
OFJB01000763
[OFJB] sludge metagenome; sludge
4902
4976
+
Thr
TGT
[ENA]
¢þ
>WENV181402389
OFTY01001028
[OFTY] sludge metagenome; sludge
4902
4976
+
Thr
TGT
[ENA]
¢þ
>W141151404
AXBA01000067
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
5998
6072
+
Thr
TGT
[ENA]
¡û
>W141278838
JAFV01000001
Alphaproteobacteria
Methylopila sp. 73B [JAFV]
1025891
1025817
-
Thr
TGT
[ENA]
¡û
>WENV183731163
PJTS01014649
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
170
96
-
Thr
TGT
[ENA]
¢þ
>WENV183743361
PJUJ01000669
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
3350
3276
-
Thr
TGT
[ENA]
¢þ
>WENV183744121
PJUK01000608
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
9132
9206
+
Thr
TGT
[ENA]
¢þ
>WENV183745010
PJUL01001307
[PJUL] feces metagenome; Chicken feces enriched on filter paper
3350
3276
-
Thr
TGT
[ENA]
¢þ
>WENV170577133
FRDC01003531
[FRDC] freshwater metagenome; water
4758
4684
-
Thr
TGT
[ENA]
¢þ
>C181099794
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
2591776
2591702
-
Thr
TGT
-
¡û
>C181190814
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
22867
22941
+
Thr
TGT
-
¡û
>C191040431
CP026100
Alphaproteobacteria
Caulobacter flavus RHGG3 [CP026100]
5066881
5066807
-
Thr
TGT
-
¡û
>C191073604
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
1308876
1308802
-
Thr
TGT
-
¡û
>W141558884
JHWH01000028
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
50976
51050
+
Thr
TGT
[ENA]
¡û
>W1910006621
BAUX01000006
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
182555
182481
-
Thr
TGT
[ENA]
¡û
>W1910547089
FZNM01000014
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
19070
18996
-
Thr
TGT
[ENA]
¡û
>W1911397902
NWMQ01000002
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
116549
116475
-
Thr
TGT
[ENA]
¡û
>W1810177581
PJRQ01000016
Alphaproteobacteria
Caulobacter flavus CGMCC1 15093 [PJRQ]
3329
3255
-
Thr
TGT
[ENA]
¡û
>W1810177670
PJRS01000003
Alphaproteobacteria
Caulobacter zeae 410 [PJRS]
30550
30624
+
Thr
TGT
[ENA]
¡û
>W1810252004
PQFZ01000003
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
244104
244030
-
Thr
TGT
[ENA]
¡û
>W1810543627
QDKO01000013
Alphaproteobacteria
Caulobacter radicis 695 [QDKO]
3308
3234
-
Thr
TGT
[ENA]
¡û
>W1810543696
QDKP01000036
Alphaproteobacteria
Caulobacter radicis 736 [QDKP]
3265
3191
-
Thr
TGT
[ENA]
¡û
>W1810603424
QGLF01000005
Alphaproteobacteria
Zavarzinia compransoris DSM 1231 [QGLF]
435609
435535
-
Thr
TGT
[ENA]
¡û
>W1610056627
BBWK01000070
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
15102
15176
+
Thr
TGT
[ENA]
¡û
>W1710053326
BBWK01000070
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
15102
15176
+
Thr
TGT
[ENA]
¡û
>W1710524482
FNIT01000006
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
295363
295289
-
Thr
TGT
[ENA]
¡û
>W1710564927
FOQV01000006
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
271016
270942
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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