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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.430854 (67 seq.)
>W1711343918
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
4958713
4958641
-
Gln
CTG
[ENA]
¡û
>W1711491917
MKJY01000601
Actinomycetota
Actinomadura sp. CNU-125 [MKJY]
4414
4342
-
Gln
CTG
[ENA]
¡û
>W1711664144
MQVR01000010
Actinomycetota
Bowdeniella nasicola [MQVR]
6513
6587
+
Gln
CTG
[ENA]
¡û
>W1711790873
MWIH01000008
Actinomycetota
Saccharomonospora piscinae LRS4.154 [MWIH]
298643
298715
+
Gln
CTG
[ENA]
¡û
>W131011062
AICW01000143
Actinomycetota
Saccharomonospora iraqiensis IQ-H1 [AICW]
297
369
+
Gln
CTG
[ENA]
¡û
>W131053516
ANAD01000022
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
40973
40899
-
Gln
CTG
[ENA]
¡û
>W131054279
ANAS01000011
Actinomycetota
Nocardiopsis baichengensis YIM 90130 [ANAS]
44164
44238
+
Gln
CTG
[ENA]
¡û
>W131054870
ANBB01000047
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
98791
98865
+
Gln
CTG
[ENA]
¡û
>W131055169
ANBG01000375
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
88922
88996
+
Gln
CTG
[ENA]
¡û
>W131170513
ARFO01000023
Actinomycetota
Actinomadura flavalba DSM 45200 [ARFO]
66444
66372
-
Gln
CTG
[ENA]
¡û
>W131179379
ARMI01000055
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
161194
161266
+
Gln
CTG
[ENA]
¡û
>W131179846
ARMS01000032
Actinomycetota
Actinomadura atramentaria DSM 43919 [ARMS]
19685
19613
-
Gln
CTG
[ENA]
¡û
>W131217134
ATWL01000011
Actinomycetota
Ruania albidiflava DSM 18029 [ATWL]
28691
28619
-
Gln
CTG
[ENA]
¡û
>W131234795
AULB01000024
Actinomycetota
Actinomadura rifamycini DSM 43936 [AULB]
64866
64794
-
Gln
CTG
[ENA]
¡û
>C021632
AM420293
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [AM420293]
6892450
6892376
-
Gln
CTG
[Ensembl]
¡û
>WENV181227979
OFDN01095384
[OFDN] hot springs metagenome; Water
478
404
-
Gln
CTG
[ENA]
¢þ
>WENV181641948
OGNF01038219
[OGNF] metagenome; Human gut stool
110
182
+
Gln
CTG
[ENA]
¢þ
>W141200904
AZAK01000005
Actinomycetota
Haloechinothrix halophila YIM 93223 [AZAK]
701332
701260
-
Gln
CTG
[ENA]
¡û
>W141215942
AZUM01000005
Actinomycetota
Saccharomonospora piscinae CNQ490 [AZUM]
49129
49057
-
Gln
CTG
[ENA]
¡û
>W141275796
JADG01000018
Actinomycetota
Actinomadura oligospora ATCC 43269 [JADG]
86121
86049
-
Gln
CTG
[ENA]
¡û
>WENV183707811
PDWI01010787
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10267
10195
-
Gln
CTG
[ENA]
¢þ
>WENV183718441
PDWJ01004080
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
4055
3983
-
Gln
CTG
[ENA]
¢þ
>WENV170551576
CXWJ01013259
[CXWJ] wastewater metagenome; activated sludge
2525
2599
+
Gln
CTG
[ENA]
¢þ
>WENV170648194
JRHI01000030
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
61114
61188
+
Gln
CTG
[ENA]
¢þ
>C181064843
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
1023975
1024047
+
Gln
CTG
-
¡û
>C181072222
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
5046267
5046195
-
Gln
CTG
-
¡û
>C191212892
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
5137158
5137230
+
Gln
CTG
-
¡û
>W141563897
JIAI01000006
Actinomycetota
Pseudonocardia acaciae DSM 45401 [JIAI]
205376
205448
+
Gln
CTG
[ENA]
¡û
>W09109539
ABUI01000002
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
236733
236661
-
Gln
CTG
[ENA]
¡û
>W141731283
JNIY01000009
Actinomycetota
Paraoerskovia marina DSM 21750 [JNIY]
51364
51436
+
Gln
CTG
[ENA]
¡û
>W1910803666
MTBP01000002
Actinomycetota
Actinomadura rubteroloni 5·î2Æü [MTBP]
1021617
1021545
-
Gln
CTG
[ENA]
¡û
>W1911572279
PDBV01000001
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 DSM 40517 [PDBV]
7272765
7272693
-
Gln
CTG
[ENA]
¡û
>W1911678989
QHJN01000219
Actinomycetota
Actinomadura sp. WAC 06369 [QHJN]
9488
9416
-
Gln
CTG
[ENA]
¡û
>W1911709900
QPNC01000001
Actinomycetota
Nocardiopsis sp. FIRDI 009 [QPNC]
104955
105027
+
Gln
CTG
[ENA]
¡û
>W1810046865
NYMS01000058
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
108443
108371
-
Gln
CTG
[ENA]
¡û
>W1810046868
NYMS01000060
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
25278
25350
+
Gln
CTG
[ENA]
¡û
>W1810400337
PYGA01000014
Actinomycetota
Murinocardiopsis flavida DSM 45312 [PYGA]
10565
10637
+
Gln
CTG
[ENA]
¡û
>W1810570449
QEIM01000015
Actinomycetota
Marinitenerispora sediminis TPS83 [QEIM]
37473
37401
-
Gln
CTG
[ENA]
¡û
>W1810570569
QEIO01000034
Actinomycetota
Marinitenerispora sediminis TPS16 [QEIO]
5163
5235
+
Gln
CTG
[ENA]
¡û
>W1810698102
QLYX01000013
Actinomycetota
Actinomadura craniellae LHW63021 [QLYX]
82296
82368
+
Gln
CTG
[ENA]
¡û
>W1810756429
QPFC01001456
Actinomycetota
Nocardiopsis sp. TNDT3 [QPFC]
2743
2815
+
Gln
CTG
[ENA]
¡û
>W1810861267
QTTT01000001
Actinomycetota
Thermomonospora umbrina DSM 43927 [QTTT]
4953528
4953600
+
Gln
CTG
[ENA]
¡û
>W1810888863
QURH01000049
Actinomycetota
Actinomadura logoneensis NEAU-G17 [QURH]
3604
3676
+
Gln
CTG
[ENA]
¡û
>C151018984
CP007219
Actinomycetota
Amycolatopsis lurida [CP007219]
5226171
5226099
-
Gln
CTG
-
¡û
>C151074977
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
870670
870742
+
Gln
CTG
-
¡û
>W10118422
ADUJ01000849
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
2014
2086
+
Gln
CTG
[ENA]
¡û
>C10109668
CP002040
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
232871
232943
+
Gln
CTG
[Ensembl]
¡û
>W1511352734
JROO01000006
Actinomycetota
Streptomonospora alba YIM 90003 [JROO]
282149
282075
-
Gln
CTG
[ENA]
¡û
>W11123497
ADUJ01000849
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
2014
2086
+
Gln
CTG
[ENA]
¡û
>W1511568493
LAJC01000001
Actinomycetota
Allosalinactinospora lopnorensis CA15-2 [LAJC]
139639
139565
-
Gln
CTG
[ENA]
¡û
>W1511656789
LEKI01000006
Actinomycetota
Nocardiopsis sp. RV163 [LEKI]
78200
78128
-
Gln
CTG
[ENA]
¡û
>W11181157
AGIT01000087
Actinomycetota
Saccharomonospora iraqiensis YIM 90007 [AGIT]
8221
8149
-
Gln
CTG
[ENA]
¡û
>C161040390
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
4161812
4161884
+
Gln
CTG
[Ensembl]
¡û
>W1610067626
BCQR01000316
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
1235
1163
-
Gln
CTG
[ENA]
¡û
>W1610068554
BCRK01000189
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
383
309
-
Gln
CTG
[ENA]
¡û
>W1610068883
BCRR01000003
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
50345
50273
-
Gln
CTG
[ENA]
¡û
>W1710064999
BCQR01000316
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
1235
1163
-
Gln
CTG
[ENA]
¡û
>W1710065927
BCRK01000189
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
383
309
-
Gln
CTG
[ENA]
¡û
>W1710066256
BCRR01000003
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
50345
50273
-
Gln
CTG
[ENA]
¡û
>W1710533080
FNQV01000011
Actinomycetota
Bowdeniella nasicola [FNQV]
75474
75400
-
Gln
CTG
[ENA]
¡û
>W1710537574
FNTX01000001
Actinomycetota
Ruania alba album [FNTX]
2172596
2172524
-
Gln
CTG
[ENA]
¡û
>W1710539600
FNVO01000002
Actinomycetota
Thermomonospora echinospora [FNVO]
28687
28615
-
Gln
CTG
[ENA]
¡û
>W1710556502
FOKG01000005
Actinomycetota
Amycolatopsis marina [FOKG]
61710
61638
-
Gln
CTG
[ENA]
¡û
>W1710570157
FOUY01000023
Actinomycetota
Pseudonocardia ammonioxydans [FOUY]
70096
70024
-
Gln
CTG
[ENA]
¡û
>W1710576267
FOZX01000001
Actinomycetota
Saccharopolyspora flava [FOZX]
654736
654662
-
Gln
CTG
[ENA]
¡û
>W1710588496
FQZK01000007
Actinomycetota
Nocardiopsis flavescens [FQZK]
243957
243885
-
Gln
CTG
[ENA]
¡û
>W1710600715
FUWS01000009
Actinomycetota
Marinactinospora thermotolerans DSM 45154 [FUWS]
195443
195517
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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