This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.432384 (22 seq.)
>C171074103
CP018154
Alphaproteobacteria
Sphingorhabdus lutea LPB0140 [CP018154]
662765
662691
-
Thr
GGT
-
¡û
>C009127
CP000157
Alphaproteobacteria
Erythrobacter litoralis HTCC2594 [CP000157]
2738529
2738603
+
Thr
GGT
[Ensembl]
¡û
>WENV181322461
OFKR01013133
[OFKR] marine metagenome; sea ice
439
365
-
Thr
GGT
[ENA]
¢þ
>WENV182557784
OJDK01012169
[OJDK] seawater metagenome; Sea water
513
439
-
Thr
GGT
[ENA]
¢þ
>WENV182585828
OJHI01019436
[OJHI] seawater metagenome; Sea water
427
501
+
Thr
GGT
[ENA]
¢þ
>WENV183623570
OOGA01012015
[OOGA] marine metagenome; sea ice
312
386
+
Thr
GGT
[ENA]
¢þ
>WENV170605294
FUWD010467601
[FUWD] metagenome; unknown
51
125
+
Thr
GGT
[ENA]
¢þ
>WENV170668388
LADL02003425
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
17170
17096
-
Thr
GGT
[ENA]
¢þ
>C181062155
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
1807912
1807838
-
Thr
GGT
-
¡û
>C181068283
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
542470
542396
-
Thr
GGT
-
¡û
>W09101641
AAGG01000001
Alphaproteobacteria
Erythrobacter litoralis HTCC2594 [AAGG]
313869
313795
-
Thr
GGT
[ENA]
¡û
>C181123343
CP025804
Alphaproteobacteria
Sulfitobacter sp. SK012 [CP025804]
4073873
4073947
+
Thr
GGT
-
¡û
>C181220357
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
2551941
2552015
+
Thr
GGT
-
¡û
>W1910499697
FXYD01000003
Alphaproteobacteria
Octadecabacter ascidiaceicola CECT 8868 [FXYD]
162763
162837
+
Thr
GGT
[ENA]
¡û
>W1911532501
OGVD01000001
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
519229
519155
-
Thr
GGT
[ENA]
¡û
>C151092064
CP012160
Alphaproteobacteria
Octadecabacter temperatus SB1 [CP012160]
345999
345925
-
Thr
GGT
-
¡û
>C161073943
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
624426
624500
+
Thr
GGT
[Ensembl]
¡û
>WENV078061
AAFY01014840
Fossil microbial community from Whale Fall (Santa Cruz Basin)
459
533
+
Thr
GGT
[ENA]
>WENV078236
AAFZ01012683
Fossil microbial community from Whale Fall (Santa Cruz Basin)
625
699
+
Thr
GGT
[ENA]
>WENV078391
AAGA01006083
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
994
1068
+
Thr
GGT
[ENA]
>W1710593895
FSQW01000001
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
1308410
1308484
+
Thr
GGT
[ENA]
¡û
>W1710594950
FSRP01000001
Alphaproteobacteria
Octadecabacter temperatus [FSRP]
29795
29721
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK