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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.432501 (16 seq.)
>C021972
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
2306166
2306239
+
Cys
GCA
[Ensembl]
¡û
>C022014
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
3174374
3174301
-
Cys
GCA
[Ensembl]
¡û
>W08005650
ABIC01000004
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
118517
118590
+
Cys
GCA
[ENA]
¡û
>W08005693
ABIC01000034
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
11264
11194
-
Cys
GCA
[ENA]
¡û
>WENV170387575
CETY01450299
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2283
2356
+
Cys
GCA
[ENA]
¢þ
>C191173215
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
4475593
4475666
+
Cys
GCA
-
¡û
>C191173257
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
552433
552360
-
Cys
GCA
-
¡û
>C191185846
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
1514045
1514118
+
Cys
GCA
-
¡û
>C191185893
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
2351696
2351623
-
Cys
GCA
-
¡û
>W1911581896
PGVH01000013
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
181140
181067
-
Cys
GCA
[ENA]
¡û
>W1911581951
PGVH01000043
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
332204
332131
-
Cys
GCA
[ENA]
¡û
>W1810157801
PJCD01000041
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
70600
70673
+
Cys
GCA
[ENA]
¡û
>W1810157811
PJCD01000042
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
138259
138186
-
Cys
GCA
[ENA]
¡û
>W1810157832
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
151281
151354
+
Cys
GCA
[ENA]
¡û
>C10112829
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
2491520
2491593
+
Cys
GCA
[Ensembl]
¡û
>WENV078045
AAFY01012916
Fossil microbial community from Whale Fall (Santa Cruz Basin)
105
178
+
Cys
GCA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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