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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.433086 (38 seq.)
>W131168074
ARDU01000002
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
50250
50177
-
Cys
GCA
[ENA]
¡û
>W131169689
AREX01000008
Betaproteobacteria
Uliginosibacterium gangwonense DSM 18521 [AREX]
132830
132757
-
Cys
GCA
[ENA]
¡û
>W131223566
AUCE01000008
Betaproteobacteria
Azonexus hydrophilus DSM 23864 [AUCE]
180143
180070
-
Cys
GCA
[ENA]
¡û
>W1711387370
MEGO01000044
Betaproteobacteria
Thiobacillus sp. SCN 64-317 [MEGO]
3777
3850
+
Cys
GCA
[ENA]
¡û
>W1711506505
MKWL01000021
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
322872
322945
+
Cys
GCA
[ENA]
¡û
>W1711506556
MKWM01000074
Betaproteobacteria
Thiobacillus sp. 63-78 [MKWM]
28976
28903
-
Cys
GCA
[ENA]
¡û
>C001299
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
1810049
1810122
+
Cys
GCA
[Ensembl]
¡û
>WENV180253054
OBEQ010502270
[OBEQ] groundwater metagenome; groundwater
141
214
+
Cys
GCA
[ENA]
¢þ
>WENV180310852
OBJT01036723
[OBJT] soil metagenome; soil
365
292
-
Cys
GCA
[ENA]
¢þ
>WENV180943829
ODUC01002933
[ODUC] human metagenome; G_DNA_Supragingival plaque
132
59
-
Cys
GCA
[ENA]
¢þ
>WENV181368211
OFQK01004691
[OFQK] freshwater metagenome; Freshwater Lake
141
68
-
Cys
GCA
[ENA]
¢þ
>WENV181369366
OFQP01000788
[OFQP] freshwater metagenome; Freshwater Lake
3718
3791
+
Cys
GCA
[ENA]
¢þ
>WENV181381156
OFRE01034487
[OFRE] wastewater metagenome; Exp Tend NO 50WW
708
781
+
Cys
GCA
[ENA]
¢þ
>WENV181387265
OFRL01071507
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
194
267
+
Cys
GCA
[ENA]
¢þ
>WENV181401086
OFSF01053559
[OFSF] wastewater metagenome; Exp Tend VB 100WW
20
93
+
Cys
GCA
[ENA]
¢þ
>WENV181401165
OFSF01069034
[OFSF] wastewater metagenome; Exp Tend VB 100WW
542
615
+
Cys
GCA
[ENA]
¢þ
>WENV181414985
OGCL01002740
[OGCL] hot springs metagenome; Hot spring water
2063
1990
-
Cys
GCA
[ENA]
¢þ
>WENV181416215
OGCL01061923
[OGCL] hot springs metagenome; Hot spring water
15
88
+
Cys
GCA
[ENA]
¢þ
>WENV170558201
CXWL01056530
[CXWL] groundwater metagenome; biofilm material
13127
13054
-
Cys
GCA
[ENA]
¢þ
>WENV170639552
JFJP01004348
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2283
2356
+
Cys
GCA
[ENA]
¢þ
>WENV170653430
JRYJ01000710
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
25449
25522
+
Cys
GCA
[ENA]
¢þ
>WENV170662330
JXWW01039152
[JXWW] soil metagenome; rice field; organic GM Plot
292
365
+
Cys
GCA
[ENA]
¢þ
>C191019165
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
3270742
3270815
+
Cys
GCA
-
¡û
>W1910183554
BJNV01000013
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
52207
52134
-
Cys
GCA
[ENA]
¡û
>W1911072290
NMRM01000061
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFDO [NMRM]
6233
6306
+
Cys
GCA
[ENA]
¡û
>W1911072310
NMRN01000002
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFDCM [NMRN]
213245
213172
-
Cys
GCA
[ENA]
¡û
>W1810195619
PKRR01000009
Betaproteobacteria
Uliginosibacterium sp. TH139 [PKRR]
4120
4047
-
Cys
GCA
[ENA]
¡û
>C151076178
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
3117911
3117984
+
Cys
GCA
-
¡û
>WENV030079
AACY021254033
Marine microbial communities from Global Ocean Sampling (GOS)
93
166
+
Cys
GCA
[ENA]
>C10111868
CP001965
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [CP001965]
1533149
1533222
+
Cys
GCA
[Ensembl]
¡û
>W1510720158
CXOO01000034
Betaproteobacteria
Limnohabitans sp. DM1 [CXOO]
32869
32942
+
Cys
GCA
[ENA]
¡û
>W11114417
ADDK02000002
Betaproteobacteria
Azospira oryzae PS [ADDK]
502517
502590
+
Cys
GCA
[ENA]
¡û
>C161095086
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
1892917
1892990
+
Cys
GCA
-
¡û
>W1610049625
BBFD01000057
Betaproteobacteria
Silvimonas sp. JCM 19000 [BBFD]
2113
2040
-
Cys
GCA
[ENA]
¡û
>C131000303
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
3188373
3188446
+
Cys
GCA
[Ensembl]
¡û
>W1610506472
FLQY01000182
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
4163
4236
+
Cys
GCA
[ENA]
¡û
>W1710046024
BBFD01000057
Betaproteobacteria
Silvimonas sp. JCM 19000 [BBFD]
2113
2040
-
Cys
GCA
[ENA]
¡û
>W1710498975
FLQY01000182
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
4163
4236
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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