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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.433989 (120 seq.)
>W1710777588
LJBS01000027
Bacillota
Pediococcus acidilactici [LJBS]
135
208
+
Glu
TTC
[ENA]
¡û
>W1710777618
LJBS01000042
Bacillota
Pediococcus acidilactici [LJBS]
61328
61255
-
Glu
TTC
[ENA]
¡û
>W1711005616
LQNR01000002
Bacillota
Pediococcus acidilactici [LQNR]
1521
1594
+
Glu
TTC
[ENA]
¡û
>W1711005625
LQNR01000035
Bacillota
Pediococcus acidilactici [LQNR]
46954
46881
-
Glu
TTC
[ENA]
¡û
>W1711025256
LRBW01000002
Bacillota
Pediococcus acidilactici [LRBW]
1522
1595
+
Glu
TTC
[ENA]
¡û
>W1711025265
LRBW01000015
Bacillota
Pediococcus acidilactici [LRBW]
93768
93695
-
Glu
TTC
[ENA]
¡û
>W1711068940
LSFE01000003
Bacillota
Pediococcus pentosaceus [LSFE]
182657
182584
-
Glu
TTC
[ENA]
¡û
>W131239203
BANK01000022
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
1519
1592
+
Glu
TTC
[ENA]
¡û
>W131239213
BANK01000055
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
340
267
-
Glu
TTC
[ENA]
¡û
>W1711585758
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
340263
340336
+
Glu
TTC
[ENA]
¡û
>C171034119
CP014912
Bacillota
Secundilactobacillus paracollinoides TMW 1.1979 [CP014912]
3067358
3067285
-
Glu
TTC
-
¡û
>C171034250
CP014924
Bacillota
Secundilactobacillus paracollinoides TMW 1.1995 [CP014924]
3265892
3265819
-
Glu
TTC
-
¡û
>C171034289
CP014933
Bacillota
Pediococcus claussenii TMW 2.53 [CP014933]
1627998
1628070
+
Glu
TTC
-
¡û
>C171034326
CP014933
Bacillota
Pediococcus claussenii TMW 2.53 [CP014933]
194342
194269
-
Glu
TTC
-
¡û
>C171036794
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
2091467
2091540
+
Glu
TTC
-
¡û
>C171036819
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
632826
632753
-
Glu
TTC
-
¡û
>C171083276
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
621333
621406
+
Glu
TTC
-
¡û
>C171083300
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
1361363
1361290
-
Glu
TTC
-
¡û
>C171119458
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
623928
624001
+
Glu
TTC
-
¡û
>C171119489
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
1152463
1152388
-
Glu
TTC
-
¡û
>C171119582
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
625604
625677
+
Glu
TTC
-
¡û
>C171119607
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
1343138
1343065
-
Glu
TTC
-
¡û
>C171126476
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
613362
613435
+
Glu
TTC
-
¡û
>C171126507
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
1115012
1114937
-
Glu
TTC
-
¡û
>C017422
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
678310
678384
+
Glu
TTC
[Ensembl]
¡û
>C017446
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
1210361
1210290
-
Glu
TTC
[Ensembl]
¡û
>WENV180279496
OBHX01043215
[OBHX] metagenome; feces
749
822
+
Glu
TTC
[ENA]
¢þ
>WENV180335214
OBLF01191047
[OBLF] metagenome; feces
3
77
+
Glu
TTC
[ENA]
¢þ
>WENV180349996
OBLO01228049
[OBLO] metagenome; feces
331
258
-
Glu
TTC
[ENA]
¢þ
>W141241959
CAHU01000005
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
123941
123868
-
Glu
TTC
[ENA]
¡û
>W141241986
CAHU01000008
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
1541
1616
+
Glu
TTC
[ENA]
¡û
>W141280130
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
1698795
1698868
+
Glu
TTC
[ENA]
¡û
>W141280162
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
418009
417936
-
Glu
TTC
[ENA]
¡û
>WENV183762423
PPYE01275843
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
13492
13419
-
Glu
TTC
[ENA]
¢þ
>WENV183762949
PPYE01292971
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
175
102
-
Glu
TTC
[ENA]
¢þ
>WENV170659265
JXWR01002501
[JXWR] soil metagenome; rice field; ambient CO2
39468
39393
-
Glu
TTC
[ENA]
¢þ
>WENV170659310
JXWR01003232
[JXWR] soil metagenome; rice field; ambient CO2
342
415
+
Glu
TTC
[ENA]
¢þ
>C191023233
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
640064
640138
+
Glu
TTC
-
¡û
>C191023257
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
1131003
1130930
-
Glu
TTC
-
¡û
>C191035340
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
623350
623423
+
Glu
TTC
-
¡û
>C191035365
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
1280888
1280815
-
Glu
TTC
-
¡û
>C191106191
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
787356
787429
+
Glu
TTC
-
¡û
>C191106223
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
1459094
1459021
-
Glu
TTC
-
¡û
>C191135579
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
617835
617908
+
Glu
TTC
-
¡û
>C191135603
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
1181046
1180973
-
Glu
TTC
-
¡û
>C191135636
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
720488
720561
+
Glu
TTC
-
¡û
>C191135661
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
1306038
1305965
-
Glu
TTC
-
¡û
>C191137793
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
673502
673575
+
Glu
TTC
-
¡û
>C191137826
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
1322435
1322362
-
Glu
TTC
-
¡û
>W09101464
AAEV01000008
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
67916
67843
-
Glu
TTC
[ENA]
¡û
>W09101496
AAEV01000038
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
3027
2952
-
Glu
TTC
[ENA]
¡û
>W1910181679
BJMF01000017
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
16585
16512
-
Glu
TTC
[ENA]
¡û
>W1910373915
FUHV01000001
Bacillota
Pediococcus acidilactici S7 [FUHV]
1492
1565
+
Glu
TTC
[ENA]
¡û
>C141009493
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
688973
689048
+
Glu
TTC
[Ensembl]
¡û
>C141009515
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
1174307
1174234
-
Glu
TTC
[Ensembl]
¡û
>W1910748548
MIXX01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2137 [MIXX]
231334
231261
-
Glu
TTC
[ENA]
¡û
>W1910748554
MIXX01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2137 [MIXX]
75233
75160
-
Glu
TTC
[ENA]
¡û
>W1910748599
MIXY01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2138 [MIXY]
1785
1858
+
Glu
TTC
[ENA]
¡û
>W1910748605
MIXY01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2138 [MIXY]
158152
158225
+
Glu
TTC
[ENA]
¡û
>W1910748650
MIXZ01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2139 [MIXZ]
231208
231135
-
Glu
TTC
[ENA]
¡û
>W1910748655
MIXZ01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2139 [MIXZ]
75107
75034
-
Glu
TTC
[ENA]
¡û
>W1910748696
MIYA01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2140 [MIYA]
1094
1167
+
Glu
TTC
[ENA]
¡û
>W1910748702
MIYA01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2140 [MIYA]
157979
158052
+
Glu
TTC
[ENA]
¡û
>W1910748754
MIYB01000022
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2141 [MIYB]
1797
1870
+
Glu
TTC
[ENA]
¡û
>W1910748767
MIYB01000025
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2141 [MIYB]
13566
13639
+
Glu
TTC
[ENA]
¡û
>W1910748798
MIYC01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2142 [MIYC]
231334
231261
-
Glu
TTC
[ENA]
¡û
>W1910748804
MIYC01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2142 [MIYC]
75233
75160
-
Glu
TTC
[ENA]
¡û
>W1910748850
MIYD01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.726 [MIYD]
1785
1858
+
Glu
TTC
[ENA]
¡û
>W1910748856
MIYD01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.726 [MIYD]
158152
158225
+
Glu
TTC
[ENA]
¡û
>W1910748903
MIYE01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.54 [MIYE]
4328
4401
+
Glu
TTC
[ENA]
¡û
>W1910748909
MIYE01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.54 [MIYE]
160573
160646
+
Glu
TTC
[ENA]
¡û
>W1910748956
MIYF01000012
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.1597 [MIYF]
1796
1869
+
Glu
TTC
[ENA]
¡û
>W1910748962
MIYF01000012
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.1597 [MIYF]
158159
158232
+
Glu
TTC
[ENA]
¡û
>W1910749005
MIYG01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.1150 [MIYG]
1797
1870
+
Glu
TTC
[ENA]
¡û
>W1910749011
MIYG01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.1150 [MIYG]
157588
157661
+
Glu
TTC
[ENA]
¡û
>W1910749058
MIYH01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.392 [MIYH]
1795
1868
+
Glu
TTC
[ENA]
¡û
>W1910749064
MIYH01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.392 [MIYH]
158040
158113
+
Glu
TTC
[ENA]
¡û
>W1910749111
MIYJ01000001
Bacillota
Fructilactobacillus sanfranciscensis DSM 20451 TMW 1.53 [MIYJ]
1796
1869
+
Glu
TTC
[ENA]
¡û
>W1910749117
MIYJ01000001
Bacillota
Fructilactobacillus sanfranciscensis DSM 20451 TMW 1.53 [MIYJ]
157889
157962
+
Glu
TTC
[ENA]
¡û
>W1911631250
PUFB01000004
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
357
430
+
Glu
TTC
[ENA]
¡û
>W1911631277
PUFB01000007
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
329882
329808
-
Glu
TTC
[ENA]
¡û
>W1911696855
QNGC01000012
Bacillota
Pediococcus acidilactici GS1 [QNGC]
95639
95566
-
Glu
TTC
[ENA]
¡û
>W1911696896
QNGC01000030
Bacillota
Pediococcus acidilactici GS1 [QNGC]
123641
123568
-
Glu
TTC
[ENA]
¡û
>W1911798477
QYRQ01000021
Bacillota
Pediococcus acidilactici WT [QYRQ]
1516
1589
+
Glu
TTC
[ENA]
¡û
>W1911798485
QYRQ01000029
Bacillota
Pediococcus acidilactici WT [QYRQ]
95925
95852
-
Glu
TTC
[ENA]
¡û
>W1810000820
BEWQ01000002
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
122
195
+
Glu
TTC
[ENA]
¡û
>W1810789122
QRFO01000001
Bacillota
Fructilactobacillus sanfranciscensis JCM 5668 [QRFO]
221234
221161
-
Glu
TTC
[ENA]
¡û
>W1810789128
QRFO01000001
Bacillota
Fructilactobacillus sanfranciscensis JCM 5668 [QRFO]
65141
65068
-
Glu
TTC
[ENA]
¡û
>C11113693
CP002461
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.1304 [CP002461]
1003744
1003671
-
Glu
TTC
[Ensembl]
¡û
>C11113699
CP002461
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.1304 [CP002461]
847567
847494
-
Glu
TTC
[Ensembl]
¡û
>C121006606
CP003137
Bacillota
Pediococcus claussenii ATCC BAA-344 [CP003137]
779123
779195
+
Glu
TTC
[Ensembl]
¡û
>C121006641
CP003137
Bacillota
Pediococcus claussenii ATCC BAA-344 [CP003137]
1186282
1186209
-
Glu
TTC
[Ensembl]
¡û
>C161092325
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
861459
861532
+
Glu
TTC
[Ensembl]
¡û
>C161092355
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
1320896
1320821
-
Glu
TTC
[Ensembl]
¡û
>W121011483
AGKB01000006
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
83711
83784
+
Glu
TTC
[ENA]
¡û
>W1610036240
AZFD01000188
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [AZFD]
237
310
+
Glu
TTC
[ENA]
¡û
>W1610044090
BBAG01000155
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [BBAG]
181
254
+
Glu
TTC
[ENA]
¡û
>W1610528261
JQBB01000008
Bacillota
Pediococcus claussenii [JQBB]
110224
110151
-
Glu
TTC
[ENA]
¡û
>W1610528267
JQBB01000009
Bacillota
Pediococcus claussenii [JQBB]
135
207
+
Glu
TTC
[ENA]
¡û
>W1610528390
JQBF01000002
Bacillota
Pediococcus pentosaceus [JQBF]
1572
1647
+
Glu
TTC
[ENA]
¡û
>W1610528397
JQBF01000002
Bacillota
Pediococcus pentosaceus [JQBF]
2209
2284
+
Glu
TTC
[ENA]
¡û
>W1610529485
JQCC01000009
Bacillota
Pediococcus acidilactici [JQCC]
283
356
+
Glu
TTC
[ENA]
¡û
>W1610530167
JQCQ01000048
Bacillota
Pediococcus argentinicus [JQCQ]
327
400
+
Glu
TTC
[ENA]
¡û
>W1610641774
LJBS01000027
Bacillota
Pediococcus acidilactici [LJBS]
135
208
+
Glu
TTC
[ENA]
¡û
>W1610641804
LJBS01000042
Bacillota
Pediococcus acidilactici [LJBS]
61328
61255
-
Glu
TTC
[ENA]
¡û
>W1610650083
LJIU01000003
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
1541
1616
+
Glu
TTC
[ENA]
¡û
>W1610650091
LJIU01000006
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
29501
29428
-
Glu
TTC
[ENA]
¡û
>W1610856266
LQNR01000002
Bacillota
Pediococcus acidilactici [LQNR]
1521
1594
+
Glu
TTC
[ENA]
¡û
>W1610856275
LQNR01000035
Bacillota
Pediococcus acidilactici [LQNR]
46954
46881
-
Glu
TTC
[ENA]
¡û
>W1610873368
LRBW01000002
Bacillota
Pediococcus acidilactici [LRBW]
1522
1595
+
Glu
TTC
[ENA]
¡û
>W1610873377
LRBW01000015
Bacillota
Pediococcus acidilactici [LRBW]
93768
93695
-
Glu
TTC
[ENA]
¡û
>W1610909510
LSFE01000003
Bacillota
Pediococcus pentosaceus [LSFE]
182657
182584
-
Glu
TTC
[ENA]
¡û
>W1710033279
AZFD01000188
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [AZFD]
237
310
+
Glu
TTC
[ENA]
¡û
>W1710041250
BBAG01000155
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [BBAG]
181
254
+
Glu
TTC
[ENA]
¡û
>W1710629851
JQBB01000008
Bacillota
Pediococcus claussenii [JQBB]
110224
110151
-
Glu
TTC
[ENA]
¡û
>W1710629857
JQBB01000009
Bacillota
Pediococcus claussenii [JQBB]
135
207
+
Glu
TTC
[ENA]
¡û
>W1710629980
JQBF01000002
Bacillota
Pediococcus pentosaceus [JQBF]
1572
1647
+
Glu
TTC
[ENA]
¡û
>W1710629987
JQBF01000002
Bacillota
Pediococcus pentosaceus [JQBF]
2209
2284
+
Glu
TTC
[ENA]
¡û
>W1710631075
JQCC01000009
Bacillota
Pediococcus acidilactici [JQCC]
283
356
+
Glu
TTC
[ENA]
¡û
>W1710631757
JQCQ01000048
Bacillota
Pediococcus argentinicus [JQCQ]
327
400
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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