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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.434167 (130 seq.)
>W131174392
ARIL01000019
Bacillota
Paenibacillus massiliensis 2301065 = DSM 16942 [ARIL]
9233
9303
+
Gly
TCC
[ENA]
¡û
>W131179923
ARMT01000043
Bacillota
Paenibacillus fonticola DSM 21315 [ARMT]
84360
84433
+
Gly
TCC
[ENA]
¡û
>W1711309637
MAQX01000037
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
197762
197689
-
Gly
TCC
[ENA]
¡û
>W131235808
AULV01000027
Bacillota
Paenibacillus harenae DSM 16969 [AULV]
17643
17570
-
Gly
TCC
[ENA]
¡û
>W1711677096
MRTG01000025
Bacillota
Paenibacillus amylolyticus [MRTG]
273
343
+
Gly
TCC
[ENA]
¡û
>W1711677101
MRTG01000026
Bacillota
Paenibacillus amylolyticus [MRTG]
28630
28560
-
Gly
TCC
[ENA]
¡û
>W1711677205
MRTJ01000001
Bacillota
Paenibacillus amylolyticus [MRTJ]
344612
344682
+
Gly
TCC
[ENA]
¡û
>W1711677216
MRTJ01000007
Bacillota
Paenibacillus amylolyticus [MRTJ]
106
176
+
Gly
TCC
[ENA]
¡û
>W1711677226
MRTJ01000022
Bacillota
Paenibacillus amylolyticus [MRTJ]
73685
73615
-
Gly
TCC
[ENA]
¡û
>W1711677228
MRTJ01000028
Bacillota
Paenibacillus amylolyticus [MRTJ]
14
84
+
Gly
TCC
[ENA]
¡û
>W1711677505
MRTO01000006
Bacillota
Paenibacillus amylolyticus [MRTO]
253032
252962
-
Gly
TCC
[ENA]
¡û
>W1711677511
MRTO01000014
Bacillota
Paenibacillus amylolyticus [MRTO]
184957
184887
-
Gly
TCC
[ENA]
¡û
>W1711677523
MRTO01000026
Bacillota
Paenibacillus amylolyticus [MRTO]
252
322
+
Gly
TCC
[ENA]
¡û
>W1711677524
MRTO01000029
Bacillota
Paenibacillus amylolyticus [MRTO]
84
154
+
Gly
TCC
[ENA]
¡û
>W1711677758
MRTS01000001
Bacillota
Paenibacillus sp. FSL R5-0765 [MRTS]
676797
676727
-
Gly
TCC
[ENA]
¡û
>W1711677767
MRTS01000022
Bacillota
Paenibacillus sp. FSL R5-0765 [MRTS]
98211
98141
-
Gly
TCC
[ENA]
¡û
>W1711677774
MRTS01000041
Bacillota
Paenibacillus sp. FSL R5-0765 [MRTS]
6
76
+
Gly
TCC
[ENA]
¡û
>W1711677775
MRTS01000044
Bacillota
Paenibacillus sp. FSL R5-0765 [MRTS]
83
153
+
Gly
TCC
[ENA]
¡û
>W1711678105
MRTY01000003
Bacillota
Paenibacillus sp. FSL R7-0273 [MRTY]
14874
14944
+
Gly
TCC
[ENA]
¡û
>W1711678145
MRTY01000062
Bacillota
Paenibacillus sp. FSL R7-0273 [MRTY]
97
170
+
Gly
TCC
[ENA]
¡û
>W1711710764
MSZX01000006
Bacillota
Paenibacillus selenitireducens [MSZX]
214929
214856
-
Gly
TCC
[ENA]
¡û
>W1711826994
MXQD01000036
Bacillota
Paenibacillus sp. MY03 [MXQD]
124307
124234
-
Gly
TCC
[ENA]
¡û
>C171081436
CP018620
Bacillota
Paenibacillus xylanexedens PAMC 22703 [CP018620]
1097464
1097534
+
Gly
TCC
-
¡û
>C171081453
CP018620
Bacillota
Paenibacillus xylanexedens PAMC 22703 [CP018620]
1133440
1133510
+
Gly
TCC
-
¡û
>C171081460
CP018620
Bacillota
Paenibacillus xylanexedens PAMC 22703 [CP018620]
2842097
2842167
+
Gly
TCC
-
¡û
>C171081478
CP018620
Bacillota
Paenibacillus xylanexedens PAMC 22703 [CP018620]
6900637
6900567
-
Gly
TCC
-
¡û
>W141073480
ASSE01000212
Bacillota
Paenibacillus massiliensis T7 [ASSE]
8403
8473
+
Gly
TCC
[ENA]
¡û
>W08007916
ABKS01000001
Bacillota
Paenibacillus sp. JDR-2 [ABKS]
856362
856292
-
Gly
TCC
[ENA]
¡û
>W141255902
CBVJ010000101
Bacillota
Paenibacillus gorillae G1 [CBVJ]
28440
28367
-
Gly
TCC
[ENA]
¡û
>W141263385
CCDG010000005
Bacillota
Paenibacillus camerounensis G4 [CCDG]
1127
1200
+
Gly
TCC
[ENA]
¡û
>W141263420
CCDG010000037
Bacillota
Paenibacillus camerounensis G4 [CCDG]
56406
56479
+
Gly
TCC
[ENA]
¡û
>W141263450
CCDG010000101
Bacillota
Paenibacillus camerounensis G4 [CCDG]
19247
19174
-
Gly
TCC
[ENA]
¡û
>WENV183566812
OOCB01000017
[OOCB] human gut metagenome; human gut
518
588
+
Gly
TCC
[ENA]
¢þ
>WENV183566917
OOCB01000057
[OOCB] human gut metagenome; human gut
45380
45450
+
Gly
TCC
[ENA]
¢þ
>WENV183567973
OOCB01001532
[OOCB] human gut metagenome; human gut
30602
30532
-
Gly
TCC
[ENA]
¢þ
>WENV183568305
OOCB01002794
[OOCB] human gut metagenome; human gut
18770
18700
-
Gly
TCC
[ENA]
¢þ
>WENV183729828
PJTR01000099
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
21116
21189
+
Gly
TCC
[ENA]
¢þ
>WENV183730020
PJTR01000335
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
28337
28264
-
Gly
TCC
[ENA]
¢þ
>WENV183736898
PJUD01000086
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
132762
132689
-
Gly
TCC
[ENA]
¢þ
>C181182383
CP029639
Bacillota
Paenibacillus sp. DCT19 [CP029639]
317122
317192
+
Gly
TCC
-
¡û
>C181182399
CP029639
Bacillota
Paenibacillus sp. DCT19 [CP029639]
356231
356301
+
Gly
TCC
-
¡û
>C181182405
CP029639
Bacillota
Paenibacillus sp. DCT19 [CP029639]
1971300
1971370
+
Gly
TCC
-
¡û
>C181182422
CP029639
Bacillota
Paenibacillus sp. DCT19 [CP029639]
5734634
5734564
-
Gly
TCC
-
¡û
>C191007125
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
6085847
6085920
+
Gly
TCC
-
¡û
>C191122459
CP034248
Bacillota
Paenibacillus lentus DSM 25539 [CP034248]
4471964
4471894
-
Gly
TCC
-
¡û
>C191143882
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
3755073
3755146
+
Gly
TCC
-
¡û
>W1910154953
BIME01000009
Bacillota
Paenibacillus illinoisensis NBRC 15959 [BIME]
14
84
+
Gly
TCC
[ENA]
¡û
>W1910154959
BIME01000012
Bacillota
Paenibacillus illinoisensis NBRC 15959 [BIME]
13
83
+
Gly
TCC
[ENA]
¡û
>W1910154962
BIME01000024
Bacillota
Paenibacillus illinoisensis NBRC 15959 [BIME]
29908
29838
-
Gly
TCC
[ENA]
¡û
>W1910212033
FMIS01000023
Bacillota
Paenibacillus amylolyticus [FMIS]
277495
277425
-
Gly
TCC
[ENA]
¡û
>W1910212047
FMIS01000032
Bacillota
Paenibacillus amylolyticus [FMIS]
1054
1124
+
Gly
TCC
[ENA]
¡û
>W1910212063
FMIS01000035
Bacillota
Paenibacillus amylolyticus [FMIS]
1829
1899
+
Gly
TCC
[ENA]
¡û
>W1910212080
FMIS01000037
Bacillota
Paenibacillus amylolyticus [FMIS]
1730
1800
+
Gly
TCC
[ENA]
¡û
>W1910340329
FTLT01000030
Bacillota
Paenibacillus bouchesdurhonensis Marseille-P3071 [FTLT]
177197
177124
-
Gly
TCC
[ENA]
¡û
>W1910438358
FWCJ01000013
Bacillota
Cohnella massiliensis 6021052837 [FWCJ]
16851
16778
-
Gly
TCC
[ENA]
¡û
>W1911143974
NPBI01000051
Bacillota
Paenibacillus sp. 7516 [NPBI]
14
84
+
Gly
TCC
[ENA]
¡û
>W1911495898
OBQL01000005
Bacillota
Paenibacillus sp. RU26A [OBQL]
419557
419487
-
Gly
TCC
[ENA]
¡û
>W1911495902
OBQL01000008
Bacillota
Paenibacillus sp. RU26A [OBQL]
213567
213637
+
Gly
TCC
[ENA]
¡û
>W1911495945
OBQL01000024
Bacillota
Paenibacillus sp. RU26A [OBQL]
57518
57448
-
Gly
TCC
[ENA]
¡û
>W1911495956
OBQL01000026
Bacillota
Paenibacillus sp. RU26A [OBQL]
33946
33876
-
Gly
TCC
[ENA]
¡û
>W1911495985
OBQM01000005
Bacillota
Paenibacillus sp. RU5M [OBQM]
419555
419485
-
Gly
TCC
[ENA]
¡û
>W1911495989
OBQM01000008
Bacillota
Paenibacillus sp. RU5M [OBQM]
213567
213637
+
Gly
TCC
[ENA]
¡û
>W1911496032
OBQM01000024
Bacillota
Paenibacillus sp. RU5M [OBQM]
57518
57448
-
Gly
TCC
[ENA]
¡û
>W1911496043
OBQM01000026
Bacillota
Paenibacillus sp. RU5M [OBQM]
33945
33875
-
Gly
TCC
[ENA]
¡û
>W1911565663
PCOF01000003
Bacillota
Paenibacillus sp. MYb67 [PCOF]
410259
410329
+
Gly
TCC
[ENA]
¡û
>W1911565681
PCOF01000010
Bacillota
Paenibacillus sp. MYb67 [PCOF]
212146
212076
-
Gly
TCC
[ENA]
¡û
>W1911565688
PCOF01000020
Bacillota
Paenibacillus sp. MYb67 [PCOF]
85
155
+
Gly
TCC
[ENA]
¡û
>W1911565690
PCOF01000021
Bacillota
Paenibacillus sp. MYb67 [PCOF]
153
223
+
Gly
TCC
[ENA]
¡û
>W1911566528
PCOX01000001
Bacillota
Paenibacillus sp. MYb63 [PCOX]
483991
484061
+
Gly
TCC
[ENA]
¡û
>W1911566555
PCOX01000007
Bacillota
Paenibacillus sp. MYb63 [PCOX]
308946
308876
-
Gly
TCC
[ENA]
¡û
>W1911566569
PCOX01000009
Bacillota
Paenibacillus sp. MYb63 [PCOX]
255158
255088
-
Gly
TCC
[ENA]
¡û
>W1911566582
PCOX01000016
Bacillota
Paenibacillus sp. MYb63 [PCOX]
261
331
+
Gly
TCC
[ENA]
¡û
>W1911771059
QXJM01000016
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
66122
66195
+
Gly
TCC
[ENA]
¡û
>W1911771110
QXJM01000058
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
1597
1670
+
Gly
TCC
[ENA]
¡û
>W1911771114
QXJM01000058
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
8356
8283
-
Gly
TCC
[ENA]
¡û
>W1911810926
QZCF01000008
Bacillota
Paenibacillus sp. 1011MAR3C5 [QZCF]
228103
228030
-
Gly
TCC
[ENA]
¡û
>W1810161573
PJFA01000001
Bacillota
Paenibacillus sp. BGI2013 [PJFA]
100958
101028
+
Gly
TCC
[ENA]
¡û
>W1810161620
PJFA01000010
Bacillota
Paenibacillus sp. BGI2013 [PJFA]
1055
1125
+
Gly
TCC
[ENA]
¡û
>W1810161648
PJFA01000015
Bacillota
Paenibacillus sp. BGI2013 [PJFA]
1726
1796
+
Gly
TCC
[ENA]
¡û
>W1810161662
PJFA01000027
Bacillota
Paenibacillus sp. BGI2013 [PJFA]
31028
30958
-
Gly
TCC
[ENA]
¡û
>W1810195146
PKQK01000001
Bacillota
Paenibacillus sp. PCH8 [PKQK]
2148855
2148925
+
Gly
TCC
[ENA]
¡û
>W1810195183
PKQK01000001
Bacillota
Paenibacillus sp. PCH8 [PKQK]
945671
945601
-
Gly
TCC
[ENA]
¡û
>W1810195199
PKQK01000001
Bacillota
Paenibacillus sp. PCH8 [PKQK]
907656
907586
-
Gly
TCC
[ENA]
¡û
>W1810195205
PKQK01000002
Bacillota
Paenibacillus sp. PCH8 [PKQK]
326210
326140
-
Gly
TCC
[ENA]
¡û
>W1810271932
PRLG01000020
Bacillota
Paenibacillus illinoisensis E3 [PRLG]
588854
588784
-
Gly
TCC
[ENA]
¡û
>W1810671918
QJTA01000019
Bacillota
Paenibacillus sp. OV191 [QJTA]
3303
3376
+
Gly
TCC
[ENA]
¡û
>W1810684134
QKWW01000043
Bacillota
Paenibacillus silvae NC2 [QKWW]
31
101
+
Gly
TCC
[ENA]
¡û
>W1810684135
QKWW01000057
Bacillota
Paenibacillus silvae NC2 [QKWW]
30
100
+
Gly
TCC
[ENA]
¡û
>W1810684141
QKWW01000069
Bacillota
Paenibacillus silvae NC2 [QKWW]
60873
60803
-
Gly
TCC
[ENA]
¡û
>W1810684150
QKWW01000125
Bacillota
Paenibacillus silvae NC2 [QKWW]
23021
22951
-
Gly
TCC
[ENA]
¡û
>W1810787806
QRDZ01000014
Bacillota
Cohnella phaseoli CECT 7287 [QRDZ]
35530
35603
+
Gly
TCC
[ENA]
¡û
>W1810860948
QTTN01000020
Bacillota
Paenibacillus taihuensis CGMCC 1.10966 [QTTN]
118059
117986
-
Gly
TCC
[ENA]
¡û
>W1810870258
QUBQ01000006
Bacillota
Paenibacillus paeoniae M4BSY-1 [QUBQ]
303038
302965
-
Gly
TCC
[ENA]
¡û
>W1510562386
CTED01000001
Bacillota
Paenibacillus ihuae GD6 [CTED]
195
268
+
Gly
TCC
[ENA]
¡û
>W1510562392
CTED01000058
Bacillota
Paenibacillus ihuae GD6 [CTED]
23483
23556
+
Gly
TCC
[ENA]
¡û
>W1511657264
LELF01000038
Bacillota
Paenibacillus sp. VT-400 [LELF]
361368
361298
-
Gly
TCC
[ENA]
¡û
>W1511657286
LELF01000057
Bacillota
Paenibacillus sp. VT-400 [LELF]
30470
30400
-
Gly
TCC
[ENA]
¡û
>W1511657318
LELF01000065
Bacillota
Paenibacillus sp. VT-400 [LELF]
256908
256838
-
Gly
TCC
[ENA]
¡û
>W1511657325
LELF01000067
Bacillota
Paenibacillus sp. VT-400 [LELF]
959254
959324
+
Gly
TCC
[ENA]
¡û
>W1610616725
LGRP01000004
Bacillota
Paenibacillus sp. O199 [LGRP]
233964
234034
+
Gly
TCC
[ENA]
¡û
>W1610616747
LGRP01000022
Bacillota
Paenibacillus sp. O199 [LGRP]
347
420
+
Gly
TCC
[ENA]
¡û
>W1611057294
MAQX01000037
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
197762
197689
-
Gly
TCC
[ENA]
¡û
>W1710511836
FMYY01000015
Bacillota
Paenibacillus sp. cl123 [FMYY]
389
462
+
Gly
TCC
[ENA]
¡û
>W1710511852
FMYY01000019
Bacillota
Paenibacillus sp. cl123 [FMYY]
121244
121171
-
Gly
TCC
[ENA]
¡û
>W1710512588
FMZN01000001
Bacillota
Paenibacillus sp. CF095 [FMZN]
3433117
3433047
-
Gly
TCC
[ENA]
¡û
>W1710512619
FMZN01000005
Bacillota
Paenibacillus sp. CF095 [FMZN]
897
967
+
Gly
TCC
[ENA]
¡û
>W1710512630
FMZN01000006
Bacillota
Paenibacillus sp. CF095 [FMZN]
1025
1095
+
Gly
TCC
[ENA]
¡û
>W1710512651
FMZN01000013
Bacillota
Paenibacillus sp. CF095 [FMZN]
30239
30169
-
Gly
TCC
[ENA]
¡û
>W1710520548
FNFR01000006
Bacillota
Paenibacillus sp. OK060 [FNFR]
400453
400380
-
Gly
TCC
[ENA]
¡û
>W1710520550
FNFR01000007
Bacillota
Paenibacillus sp. OK060 [FNFR]
187801
187871
+
Gly
TCC
[ENA]
¡û
>W1710520572
FNFR01000009
Bacillota
Paenibacillus sp. OK060 [FNFR]
210093
210020
-
Gly
TCC
[ENA]
¡û
>W1710520594
FNFR01000019
Bacillota
Paenibacillus sp. OK060 [FNFR]
33833
33763
-
Gly
TCC
[ENA]
¡û
>W1710529251
FNNV01000012
Bacillota
Paenibacillus sp. CF384 [FNNV]
225417
225347
-
Gly
TCC
[ENA]
¡û
>W1710529281
FNNV01000029
Bacillota
Paenibacillus sp. CF384 [FNNV]
54944
54871
-
Gly
TCC
[ENA]
¡û
>W1710534157
FNRR01000002
Bacillota
Paenibacillus sp. 276b [FNRR]
946782
946852
+
Gly
TCC
[ENA]
¡û
>W1710534183
FNRR01000005
Bacillota
Paenibacillus sp. 276b [FNRR]
1977
2050
+
Gly
TCC
[ENA]
¡û
>W1710534195
FNRR01000009
Bacillota
Paenibacillus sp. 276b [FNRR]
20
93
+
Gly
TCC
[ENA]
¡û
>W1710534200
FNRR01000016
Bacillota
Paenibacillus sp. 276b [FNRR]
88
158
+
Gly
TCC
[ENA]
¡û
>W1710546524
FOCH01000001
Bacillota
Paenibacillus sp. OK076 [FOCH]
1010372
1010442
+
Gly
TCC
[ENA]
¡û
>W1710546557
FOCH01000004
Bacillota
Paenibacillus sp. OK076 [FOCH]
1873
1946
+
Gly
TCC
[ENA]
¡û
>W1710546585
FOCH01000006
Bacillota
Paenibacillus sp. OK076 [FOCH]
1142
1215
+
Gly
TCC
[ENA]
¡û
>W1710546606
FOCH01000012
Bacillota
Paenibacillus sp. OK076 [FOCH]
37157
37084
-
Gly
TCC
[ENA]
¡û
>W1710559588
FOMT01000002
Bacillota
Paenibacillus catalpae [FOMT]
3210
3283
+
Gly
TCC
[ENA]
¡û
>W1710565409
FORE01000027
Bacillota
Paenibacillus sp. UNC496MF [FORE]
2411
2484
+
Gly
TCC
[ENA]
¡û
>W1710576632
FPAD01000003
Bacillota
Paenibacillus sp. BC26 [FPAD]
2384
2457
+
Gly
TCC
[ENA]
¡û
>W1710576644
FPAD01000004
Bacillota
Paenibacillus sp. BC26 [FPAD]
578874
578804
-
Gly
TCC
[ENA]
¡û
>W1710579748
FPIU01000010
Bacillota
Paenibacillus sp. UNCCL117 [FPIU]
270292
270219
-
Gly
TCC
[ENA]
¡û
>W1710579767
FPIU01000021
Bacillota
Paenibacillus sp. UNCCL117 [FPIU]
121259
121186
-
Gly
TCC
[ENA]
¡û
>W1710742064
LGRP01000004
Bacillota
Paenibacillus sp. O199 [LGRP]
233964
234034
+
Gly
TCC
[ENA]
¡û
>W1710742086
LGRP01000022
Bacillota
Paenibacillus sp. O199 [LGRP]
347
420
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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