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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.435239 (20 seq.)
>W131163828
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
1926932
1927005
+
Gln
CTG
[ENA]
¡û
>W131186324
ARWA01000001
Alphaproteobacteria
Methyloferula stellata AR4 [ARWA]
2226272
2226199
-
Gln
CTG
[ENA]
¡û
>W131218803
ATYA01000002
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
434427
434354
-
Gln
CTG
[ENA]
¡û
>C171101480
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
3188804
3188877
+
Gln
CTG
-
¡û
>WENV180254277
OBEQ010617285
[OBEQ] groundwater metagenome; groundwater
395
468
+
Gln
CTG
[ENA]
¢þ
>WENV180275125
OBHS01013424
[OBHS] metagenome; freshwater sediment
178
105
-
Gln
CTG
[ENA]
¢þ
>WENV181412157
OGCI01089553
[OGCI] hot springs metagenome; Hot spring water
412
485
+
Gln
CTG
[ENA]
¢þ
>WENV183672112
ORJL011136509
[ORJL] groundwater metagenome; groundwater
988
1061
+
Gln
CTG
[ENA]
¢þ
>WENV183672113
ORJL011136509
[ORJL] groundwater metagenome; groundwater
4149
4222
+
Gln
CTG
[ENA]
¢þ
>WENV170553491
CXWK01020740
[CXWK] wastewater metagenome; activated sludge
15571
15644
+
Gln
CTG
[ENA]
¢þ
>C191000381
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
357944
358017
+
Gln
CTG
-
¡û
>C191029929
CP025086
Alphaproteobacteria
Methylovirgula ligni BW863 [CP025086]
3137540
3137467
-
Gln
CTG
-
¡û
>C191118907
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
2343617
2343544
-
Gln
CTG
-
¡û
>C191118908
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
2341911
2341838
-
Gln
CTG
-
¡û
>C191221082
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
2686344
2686271
-
Gln
CTG
-
¡û
>W1911787962
QYBB01000001
Alphaproteobacteria
Lichenibacterium minor RmlP026 [QYBB]
438473
438546
+
Gln
CTG
[ENA]
¡û
>W1911788057
QYBC01000030
Alphaproteobacteria
Lichenibacterium ramalinae RmlP001 [QYBC]
14335
14262
-
Gln
CTG
[ENA]
¡û
>SRA1013912
SRR023820.12509
Pru Toh Daeng peat swamp (SRP001114)
156
84
-
Gln
CTG
[SRA]
>W121067995
AJTV01000022
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
56725
56652
-
Gln
CTG
[ENA]
¡û
>W1710567152
FOSN01000001
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
205401
205474
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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