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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.435363 (22 seq.)
>W1711460779
MJGC01000062
Cyanobacteriota
Desertifilum tharense IPPAS B-1220 [MJGC]
23139
23068
-
Lys
TTT
[ENA]
¡û
>W1711666753
MRCG01000003
Cyanobacteriota
Phormidium tenue NIES-30 [MRCG]
204176
204247
+
Lys
TTT
[ENA]
¡û
>C171127272
CP021983
Cyanobacteriota
Halomicronema hongdechloris C2206 [CP021983]
5564987
5564916
-
Lys
TTT
-
¡û
>W131036403
ALVP01000006
Cyanobacteriota
Nodosilinea nodulosa PCC 7104 [ALVP]
624250
624179
-
Lys
TTT
[ENA]
¡û
>C021120
AP008231
Cyanobacteriota
Synechococcus elongatus PCC 6301 [AP008231]
123894
123823
-
Lys
TTT
[Ensembl]
¡û
>C021136
CP000100
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [CP000100]
1496904
1496975
+
Lys
TTT
[Ensembl]
¡û
>WENV171002933
NJIW01000073
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
2534
2605
+
Lys
TTT
[ENA]
¢þ
>C191099565
CP033061
Cyanobacteriota
Synechococcus elongatus UTEX 3055 [CP033061]
2390366
2390293
-
Lys
TTT
-
¡û
>W09101101
AADZ01000001
Cyanobacteriota
Synechococcus elongatus PCC 7942 [AADZ]
785524
785597
+
Lys
TTT
[ENA]
¡û
>W1910976644
NKFP01000004
Cyanobacteriota
Leptolyngbya ohadii IS1 [NKFP]
709173
709244
+
Lys
TTT
[ENA]
¡û
>W1911741955
QVFV01000006
Cyanobacteriota
Leptolyngbya sp. LK str. Lakshadweep [QVFV]
199572
199501
-
Lys
TTT
[ENA]
¡û
>W1810366235
PVWE01000363
Cyanobacteriota
filamentous cyanobacterium CCP1 [PVWE]
2474
2403
-
Lys
TTT
[ENA]
¡û
>W1810398613
PYEQ01000775
Cyanobacteriota
filamentous cyanobacterium CCP5 [PYEQ]
1092
1021
-
Lys
TTT
[ENA]
¡û
>W1810400226
PYFY01000004
Cyanobacteriota
filamentous cyanobacterium CCP4 [PYFY]
35737
35808
+
Lys
TTT
[ENA]
¡û
>W1810401282
PYGV01000051
Cyanobacteriota
filamentous cyanobacterium CCP3 [PYGV]
3113
3042
-
Lys
TTT
[ENA]
¡û
>C161002688
AP017308
Cyanobacteriota
Leptolyngbya sp. NIES-3755 [AP017308]
4625957
4625886
-
Lys
TTT
[Ensembl]
¡û
>C161002803
AP017367
Cyanobacteriota
Leptolyngbya sp. O-77 [AP017367]
615003
614930
-
Lys
TTT
[Ensembl]
¡û
>W1610057092
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
1506632
1506703
+
Lys
TTT
[ENA]
¡û
>C131004388
CP003591
Cyanobacteriota
Geitlerinema sp. PCC 7407 [CP003591]
1473705
1473776
+
Lys
TTT
[Ensembl]
¡û
>C131004879
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
6457288
6457359
+
Lys
TTT
[Ensembl]
¡û
>W1710053791
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
1506632
1506703
+
Lys
TTT
[ENA]
¡û
>W1710698122
LAZT01000060
Cyanobacteriota
Halomicronema hongdechloris C2206 [LAZT]
7153
7224
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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