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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.435498 (62 seq.)
>W1712041350
NFKZ01000046
Bacillota
Lactobacillus gallinarum [NFKZ]
9444
9372
-
Trp
CCA
[ENA]
¡û
>W1712042262
NFLP01000044
Bacillota
Lactobacillus gallinarum [NFLP]
211
283
+
Trp
CCA
[ENA]
¡û
>C171102958
CP020029
Bacillota
Lactobacillus helveticus D75 [CP020029]
1614488
1614416
-
Trp
CCA
-
¡û
>C171108200
CP020457
Bacillota
Lactobacillus amylolyticus L6 [CP020457]
1152195
1152123
-
Trp
CCA
-
¡û
>WENV180712454
ODFT01000691
[ODFT] human metagenome; G_DNA_Posterior fornix
6124
6052
-
Trp
CCA
[ENA]
¢þ
>WENV180914540
ODSY01000067
[ODSY] human metagenome; G_DNA_Posterior fornix
6123
6051
-
Trp
CCA
[ENA]
¢þ
>WENV181025199
ODXA01000113
[ODXA] human metagenome; G_DNA_Posterior fornix
58
130
+
Trp
CCA
[ENA]
¢þ
>WENV181025217
ODXA01000160
[ODXA] human metagenome; G_DNA_Posterior fornix
6169
6097
-
Trp
CCA
[ENA]
¢þ
>WENV181030414
ODXI01000018
[ODXI] human metagenome; G_DNA_Posterior fornix
6124
6052
-
Trp
CCA
[ENA]
¢þ
>WENV181289854
OFHA01002706
[OFHA] mouse gut metagenome; faeces
59
131
+
Trp
CCA
[ENA]
¢þ
>W141228937
BAMG01000052
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens JCM 6985 [BAMG]
92
164
+
Trp
CCA
[ENA]
¡û
>C08006118
CP000517
Bacillota
Lactobacillus helveticus DPC 4571 [CP000517]
458469
458541
+
Trp
CCA
[Ensembl]
¡û
>W141255471
CBUH010000201
Bacillota
Lactobacillus helveticus CIRM-BIA 953 [CBUH]
11313
11241
-
Trp
CCA
[ENA]
¡û
>WENV183150528
OLOP01001732
[OLOP] human gut metagenome; faeces
4214
4286
+
Trp
CCA
[ENA]
¢þ
>WENV183182852
OLPK01001697
[OLPK] human gut metagenome; faeces
3127
3199
+
Trp
CCA
[ENA]
¢þ
>WENV183606223
OODN01001064
[OODN] human gut metagenome; human gut
1777
1849
+
Trp
CCA
[ENA]
¢þ
>C181027689
CP017706
Bacillota
Lactobacillus amylovorus DSM 20531 [CP017706]
672935
672863
-
Trp
CCA
-
¡û
>W09127669
ACLD01000156
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
509
437
-
Trp
CCA
[ENA]
¡û
>W09128157
ACLN01000016
Bacillota
Lactobacillus iners DSM 13335 [ACLN]
8618
8690
+
Trp
CCA
[ENA]
¡û
>C181179885
CP029544
Bacillota
Lactobacillus helsingborgensis ESL0183 [CP029544]
478879
478951
+
Trp
CCA
-
¡û
>C191073336
CP031018
Bacillota
Lactobacillus helveticus [CP031018]
482343
482415
+
Trp
CCA
-
¡û
>W1910855293
NBLE01000031
Bacillota
Lactobacillus iners KA00186 [NBLE]
1403
1475
+
Trp
CCA
[ENA]
¡û
>W1910871307
NCWZ01000042
Bacillota
Lactobacillus kefiranofaciens KR [NCWZ]
9326
9254
-
Trp
CCA
[ENA]
¡û
>W1810665972
QJOI01000056
Bacillota
Lactobacillus helveticus FAM13019 [QJOI]
9589
9517
-
Trp
CCA
[ENA]
¡û
>W1810666204
QJOM01000042
Bacillota
Lactobacillus helveticus FAM23285 [QJOM]
9474
9402
-
Trp
CCA
[ENA]
¡û
>W1810666392
QJOP01000039
Bacillota
Lactobacillus helveticus FAM14499 [QJOP]
9363
9291
-
Trp
CCA
[ENA]
¡û
>W1810666456
QJOQ01000050
Bacillota
Lactobacillus helveticus FAM8102 [QJOQ]
9474
9402
-
Trp
CCA
[ENA]
¡û
>W1810666517
QJOR01000048
Bacillota
Lactobacillus helveticus FAM14275 [QJOR]
9474
9402
-
Trp
CCA
[ENA]
¡û
>W1810679610
QKQX01000049
Bacillota
Lactobacillus helveticus FAM21493 [QKQX]
9474
9402
-
Trp
CCA
[ENA]
¡û
>C151053167
CP009531
Bacillota
Lactobacillus sp. wkB8 [CP009531]
487070
487142
+
Trp
CCA
[Ensembl]
¡û
>W10114283
ADHG01000003
Bacillota
Lactobacillus iners AB-1 [ADHG]
7999
7927
-
Trp
CCA
[ENA]
¡û
>C11111935
CP002559
Bacillota
Lactobacillus amylovorus 30SC [CP002559]
458136
458208
+
Trp
CCA
[Ensembl]
¡û
>C11112089
CP002338
Bacillota
Lactobacillus amylovorus GRL 1112 [CP002338]
458387
458459
+
Trp
CCA
[Ensembl]
¡û
>C11112888
CP002429
Bacillota
Lactobacillus helveticus H10 [CP002429]
436332
436404
+
Trp
CCA
[Ensembl]
¡û
>W11117655
ADHG01000003
Bacillota
Lactobacillus iners AB-1 [ADHG]
7999
7927
-
Trp
CCA
[ENA]
¡û
>W11137452
AEHN01000020
Bacillota
Lactobacillus iners LactinV 11V1-d [AEHN]
3218
3290
+
Trp
CCA
[ENA]
¡û
>W11137549
AEHP01000055
Bacillota
Lactobacillus iners LactinV 03V1-b [AEHP]
2997
3069
+
Trp
CCA
[ENA]
¡û
>W11137578
AEHQ01000081
Bacillota
Lactobacillus iners LactinV 01V1-a [AEHQ]
5955
5883
-
Trp
CCA
[ENA]
¡û
>W1511505338
JXJR01000005
Bacillota
Lactobacillus helsingborgensis Bma5 [JXJR]
2370
2442
+
Trp
CCA
[ENA]
¡û
>W11139589
AEKH01000031
Bacillota
Lactobacillus iners LEAF 2053A-b [AEKH]
1954
2026
+
Trp
CCA
[ENA]
¡û
>W11139598
AEKI01000001
Bacillota
Lactobacillus iners LEAF 2052A-d [AEKI]
6042
5970
-
Trp
CCA
[ENA]
¡û
>W11139671
AEKJ01000019
Bacillota
Lactobacillus iners LEAF 2062A-h1 [AEKJ]
3184
3256
+
Trp
CCA
[ENA]
¡û
>W11139711
AEKK01000010
Bacillota
Lactobacillus iners LEAF 3008A-a [AEKK]
3254
3326
+
Trp
CCA
[ENA]
¡û
>W11143455
AEPX01000005
Bacillota
Lactobacillus iners ATCC 55195 [AEPX]
5979
5907
-
Trp
CCA
[ENA]
¡û
>W1511580697
LARO01000034
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
9478
9406
-
Trp
CCA
[ENA]
¡û
>W11151740
AEXJ01000014
Bacillota
Lactobacillus iners UPII 143-D [AEXJ]
1992
2064
+
Trp
CCA
[ENA]
¡û
>C161041480
CP012381
Bacillota
Lactobacillus helveticus CAUH18 [CP012381]
449885
449957
+
Trp
CCA
-
¡û
>C161047016
CP012890
Bacillota
Lactobacillus gallinarum HFD4 [CP012890]
92904
92832
-
Trp
CCA
[Ensembl]
¡û
>W1610032843
AZCM01000042
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
3102
3174
+
Trp
CCA
[ENA]
¡û
>W1610035592
AZEP01000032
Bacillota
Lactobacillus amylolyticus DSM 11664 [AZEP]
482
554
+
Trp
CCA
[ENA]
¡û
>W1610036733
AZFM01000046
Bacillota
Lactobacillus kalixensis DSM 16043 [AZFM]
10161
10089
-
Trp
CCA
[ENA]
¡û
>W1610037755
AZGG01000050
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM [AZGG]
123
195
+
Trp
CCA
[ENA]
¡û
>W1610044095
BBAG01000155
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [BBAG]
644
716
+
Trp
CCA
[ENA]
¡û
>W1610044587
BBAQ01000045
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [BBAQ]
2658
2730
+
Trp
CCA
[ENA]
¡û
>W1610550914
JYDC01000048
Bacillota
Secundilactobacillus collinoides [JYDC]
43957
43885
-
Trp
CCA
[ENA]
¡û
>W1710030174
AZCM01000042
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
3102
3174
+
Trp
CCA
[ENA]
¡û
>W1710032631
AZEP01000032
Bacillota
Lactobacillus amylolyticus DSM 11664 [AZEP]
482
554
+
Trp
CCA
[ENA]
¡û
>W1710033772
AZFM01000046
Bacillota
Lactobacillus kalixensis DSM 16043 [AZFM]
10161
10089
-
Trp
CCA
[ENA]
¡û
>W1710034794
AZGG01000050
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM [AZGG]
123
195
+
Trp
CCA
[ENA]
¡û
>W1710041255
BBAG01000155
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [BBAG]
644
716
+
Trp
CCA
[ENA]
¡û
>W1710041685
BBAQ01000045
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [BBAQ]
2658
2730
+
Trp
CCA
[ENA]
¡û
>W1710661187
JYDC01000048
Bacillota
Secundilactobacillus collinoides [JYDC]
43957
43885
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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