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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.435716 (129 seq.)
>W1711185505
LWNL01000174
Gammaproteobacteria
Klebsiella sp. HMSC25G12 [LWNL]
44596
44522
-
Gly
TCC
[ENA]
¡û
>W1711260937
LYWN01000060
Gammaproteobacteria
Klebsiella pneumoniae [LYWN]
16681
16755
+
Gly
TCC
[ENA]
¡û
>W1711619955
MPCE01000003
Gammaproteobacteria
Klebsiella pneumoniae [MPCE]
673633
673559
-
Gly
TCC
[ENA]
¡û
>W1711638459
MPWZ03000016
Gammaproteobacteria
Klebsiella pneumoniae [MPWZ]
223285
223359
+
Gly
TCC
[ENA]
¡û
>W1711640667
MPYG03000197
Gammaproteobacteria
Klebsiella pneumoniae [MPYG]
13449
13523
+
Gly
TCC
[ENA]
¡û
>W1711663025
MQUU01000019
Gammaproteobacteria
Klebsiella pneumoniae [MQUU]
2425
2351
-
Gly
TCC
[ENA]
¡û
>W1711948535
NBOR01000011
Gammaproteobacteria
Klebsiella pneumoniae [NBOR]
224607
224681
+
Gly
TCC
[ENA]
¡û
>W1712054519
NFXU01000087
Gammaproteobacteria
Klebsiella pneumoniae [NFXU]
30570
30644
+
Gly
TCC
[ENA]
¡û
>C171051261
CP016811
Gammaproteobacteria
Klebsiella pneumoniae DHQP1002001 [CP016811]
1019801
1019875
+
Gly
TCC
-
¡û
>C171126777
CP021944
Gammaproteobacteria
Klebsiella pneumoniae AR_0152 [CP021944]
183746
183672
-
Gly
TCC
-
¡û
>C171127042
CP021960
Gammaproteobacteria
Klebsiella pneumoniae AR_0139 [CP021960]
58536
58462
-
Gly
TCC
-
¡û
>W141027590
AKYX01000063
Gammaproteobacteria
Klebsiella sp. 10982 [AKYX]
6410
6484
+
Gly
TCC
[ENA]
¡û
>WENV181461336
OGEM01005479
[OGEM] metagenome; Human gut stool
2142
2068
-
Gly
TCC
[ENA]
¢þ
>WENV181835037
OGVH01004479
[OGVH] freshwater metagenome; freshwater
750
676
-
Gly
TCC
[ENA]
¢þ
>W141184869
AYJJ01000003
Gammaproteobacteria
Klebsiella pneumoniae MGH 21 [AYJJ]
227200
227274
+
Gly
TCC
[ENA]
¡û
>WENV182400571
OIEQ01001203
[OIEQ] human gut metagenome; human gut
7193
7267
+
Gly
TCC
[ENA]
¢þ
>WENV182401698
OIER01007244
[OIER] human gut metagenome; human gut
765
839
+
Gly
TCC
[ENA]
¢þ
>W141257887
CBWQ010000527
Gammaproteobacteria
Klebsiella pneumoniae ISC21 [CBWQ]
3047
3121
+
Gly
TCC
[ENA]
¡û
>WENV182619370
OJKH01004807
[OJKH] metagenome; faeces
748
822
+
Gly
TCC
[ENA]
¢þ
>WENV182814460
OJYK01000046
[OJYK] human gut metagenome; human gut
23320
23246
-
Gly
TCC
[ENA]
¢þ
>WENV182820347
OKAL01001566
[OKAL] human gut metagenome; human gut
1155
1081
-
Gly
TCC
[ENA]
¢þ
>WENV182825963
OKCO01000687
[OKCO] human gut metagenome; human gut
228
302
+
Gly
TCC
[ENA]
¢þ
>WENV182828202
OKDF01000277
[OKDF] human gut metagenome; human gut
22562
22488
-
Gly
TCC
[ENA]
¢þ
>WENV182837370
OKGG01000004
[OKGG] human gut metagenome; human gut
102
176
+
Gly
TCC
[ENA]
¢þ
>WENV182839678
OKHF01000220
[OKHF] human gut metagenome; human gut
102
176
+
Gly
TCC
[ENA]
¢þ
>WENV182854640
OKMW01000053
[OKMW] human gut metagenome; human gut
39367
39441
+
Gly
TCC
[ENA]
¢þ
>WENV182855811
OKNE01001917
[OKNE] human gut metagenome; human gut
1096
1170
+
Gly
TCC
[ENA]
¢þ
>WENV182862013
OKPJ01000102
[OKPJ] human gut metagenome; human gut
35561
35635
+
Gly
TCC
[ENA]
¢þ
>WENV182941533
OKVG01002744
[OKVG] human gut metagenome; human gut
5166
5092
-
Gly
TCC
[ENA]
¢þ
>WENV182946883
OKVL01000192
[OKVL] human gut metagenome; human gut
38708
38634
-
Gly
TCC
[ENA]
¢þ
>WENV182952610
OKVW01004229
[OKVW] human gut metagenome; human gut
553
479
-
Gly
TCC
[ENA]
¢þ
>W141355523
JCMZ01000003
Gammaproteobacteria
Klebsiella pneumoniae BIDMC 18D [JCMZ]
186389
186463
+
Gly
TCC
[ENA]
¡û
>WENV183751481
PPYE01015378
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
256
330
+
Gly
TCC
[ENA]
¢þ
>PHG181003831
KY271400
Podoviridae
Klebsiella phage 6 LV-2017 (KY271400)
2425
2351
-
Gly
TCC
[ENA]
¡û
>C181031225
CP018306
Gammaproteobacteria
Klebsiella pneumoniae 459 [CP018306]
288492
288418
-
Gly
TCC
-
¡û
>C181171093
CP028990
Gammaproteobacteria
Klebsiella pneumoniae AR_0142 [CP028990]
876862
876936
+
Gly
TCC
-
¡û
>C191022534
CP022916
Gammaproteobacteria
Klebsiella pneumoniae ST307PT04 [CP022916]
3940005
3939931
-
Gly
TCC
-
¡û
>C191022621
CP022919
Gammaproteobacteria
Klebsiella pneumoniae ST307PT03 [CP022919]
3940001
3939927
-
Gly
TCC
-
¡û
>C191022708
CP022922
Gammaproteobacteria
Klebsiella pneumoniae ST307PT02 [CP022922]
3935205
3935131
-
Gly
TCC
-
¡û
>C191111236
CP033756
Gammaproteobacteria
Klebsiella pneumoniae FDAARGOS_566 [CP033756, CP033757]
3969613
3969687
+
Gly
TCC
-
¡û
>C191146913
CP035905
Gammaproteobacteria
Klebsiella pneumoniae BA4656 [CP035905]
5217603
5217529
-
Gly
TCC
-
¡û
>C191146941
CP035905
Gammaproteobacteria
Klebsiella pneumoniae BA4656 [CP035905]
396715
396641
-
Gly
TCC
-
¡û
>C191148517
CP036190
Gammaproteobacteria
Klebsiella pneumoniae BA34918 [CP036190]
199365
199439
+
Gly
TCC
-
¡û
>C191148545
CP036190
Gammaproteobacteria
Klebsiella pneumoniae BA34918 [CP036190]
5019235
5019309
+
Gly
TCC
-
¡û
>C191220777
LR588411
Gammaproteobacteria
Klebsiella quasipneumoniae NCTC9170 [LR588411]
4855676
4855602
-
Gly
TCC
-
¡û
>W1910018201
BDQR01000001
Gammaproteobacteria
Klebsiella pneumoniae 2H7 [BDQR]
1157608
1157534
-
Gly
TCC
[ENA]
¡û
>W1910146193
BIHW01000007
Gammaproteobacteria
Klebsiella pneumoniae TUM14043 [BIHW]
305662
305736
+
Gly
TCC
[ENA]
¡û
>W1910146847
BIIE01000001
Gammaproteobacteria
Klebsiella pneumoniae TUM14051 [BIIE]
566066
565992
-
Gly
TCC
[ENA]
¡û
>W1910400751
FUVS01000005
Gammaproteobacteria
Escherichia coli [FUVS]
157999
157925
-
Gly
TCC
[ENA]
¡û
>W1910444226
FWGL01000002
Gammaproteobacteria
Klebsiella pneumoniae VRES0298 [FWGL]
758367
758293
-
Gly
TCC
[ENA]
¡û
>W1910444302
FWGM01000009
Gammaproteobacteria
Klebsiella pneumoniae VRES0300 [FWGM]
220410
220484
+
Gly
TCC
[ENA]
¡û
>W1910457196
FWMV01000010
Gammaproteobacteria
Klebsiella variicola VRCO0376 [FWMV]
174396
174470
+
Gly
TCC
[ENA]
¡û
>W1910486375
FXNL01000002
Gammaproteobacteria
Klebsiella quasipneumoniae subsp. similipneumoniae 3189STDY5864741 [FXNL]
734199
734273
+
Gly
TCC
[ENA]
¡û
>W1910489501
FXPC01000002
Gammaproteobacteria
Klebsiella quasipneumoniae subsp. similipneumoniae 3189STDY5864768 [FXPC]
312244
312170
-
Gly
TCC
[ENA]
¡û
>W1910666809
MCJW01000065
Gammaproteobacteria
Escherichia coli HE-MDREc20 [MCJW]
73544
73618
+
Gly
TCC
[ENA]
¡û
>W1910861976
NCMG01000049
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn27 [NCMG]
143753
143827
+
Gly
TCC
[ENA]
¡û
>W1910863090
NCMV01000086
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn42 [NCMV]
22980
23054
+
Gly
TCC
[ENA]
¡û
>W1910864327
NCNM01000110
Gammaproteobacteria
Klebsiella quasipneumoniae COL-Kpn60 [NCNM]
16984
16910
-
Gly
TCC
[ENA]
¡û
>W1910869621
NCQH01000079
Gammaproteobacteria
Klebsiella quasipneumoniae COL-Kpn133 [NCQH]
26158
26084
-
Gly
TCC
[ENA]
¡û
>W1911193257
NQYU01000037
Gammaproteobacteria
Klebsiella quasipneumoniae CR34 [NQYU]
36644
36718
+
Gly
TCC
[ENA]
¡û
>W1911218854
NRQZ01000819
Gammaproteobacteria
Klebsiella pneumoniae BA2005 [NRQZ]
150
76
-
Gly
TCC
[ENA]
¡û
>W1911226680
NRWP01000073
Gammaproteobacteria
Escherichia coli A273 [NRWP]
23735
23809
+
Gly
TCC
[ENA]
¡û
>W1911248049
NSMB01000001
Gammaproteobacteria
Klebsiella pneumoniae WBB417 [NSMB]
199524
199598
+
Gly
TCC
[ENA]
¡û
>W1911395934
NWEM01000008
Gammaproteobacteria
Klebsiella pneumoniae subsp. ozaenae WCHKP030320 [NWEM]
123954
124028
+
Gly
TCC
[ENA]
¡û
>W1911421575
NXDT01000057
Gammaproteobacteria
Klebsiella pneumoniae C7 [NXDT]
13037
13111
+
Gly
TCC
[ENA]
¡û
>W1911423619
NXFJ01000114
Gammaproteobacteria
Klebsiella pneumoniae C12 [NXFJ]
2141
2067
-
Gly
TCC
[ENA]
¡û
>W1911652809
QBEZ01000003
Gammaproteobacteria
Escherichia coli SO63 [QBEZ]
29207
29281
+
Gly
TCC
[ENA]
¡û
>W1911689951
QLKH01000007
Gammaproteobacteria
Escherichia coli LMR3173 [QLKH]
99038
98964
-
Gly
TCC
[ENA]
¡û
>W1810003595
BFAI01000092
Gammaproteobacteria
Klebsiella pneumoniae MH17-016D [BFAI]
17424
17350
-
Gly
TCC
[ENA]
¡û
>W1810006695
BFCR01000044
Gammaproteobacteria
Klebsiella pneumoniae MH16-398D [BFCR]
3859
3933
+
Gly
TCC
[ENA]
¡û
>W1810007259
BFDA01000055
Gammaproteobacteria
Klebsiella pneumoniae MH16-335M [BFDA]
220372
220446
+
Gly
TCC
[ENA]
¡û
>W1810007320
BFDB01000057
Gammaproteobacteria
Klebsiella pneumoniae MH17-017D [BFDB]
28015
27941
-
Gly
TCC
[ENA]
¡û
>W1810059423
PDLC01000002
Gammaproteobacteria
Raoultella planticola FDAARGOS_428 [PDLC]
1101735
1101661
-
Gly
TCC
[ENA]
¡û
>W1810074891
PEHD01000001
Gammaproteobacteria
Klebsiella pneumoniae DS32358_14 [PEHD]
199524
199598
+
Gly
TCC
[ENA]
¡û
>W1810131302
PICM01000041
Gammaproteobacteria
Klebsiella pneumoniae C17 [PICM]
12197
12271
+
Gly
TCC
[ENA]
¡û
>W1810133381
PIDN01000641
Gammaproteobacteria
Klebsiella pneumoniae D37 [PIDN]
340
266
-
Gly
TCC
[ENA]
¡û
>W1810150215
PIUN01000128
Gammaproteobacteria
Klebsiella pneumoniae 14CSI [PIUN]
23743
23669
-
Gly
TCC
[ENA]
¡û
>W1810243049
PPXS01000065
Gammaproteobacteria
Klebsiella pneumoniae BA29256 [PPXS]
13037
13111
+
Gly
TCC
[ENA]
¡û
>W1810258530
PQKH01000020
Gammaproteobacteria
Klebsiella pneumoniae KPNIH42 [PQKH]
103010
103084
+
Gly
TCC
[ENA]
¡û
>W1810290112
PTFI01000015
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae 649/1571 [PTFI]
22984
22910
-
Gly
TCC
[ENA]
¡û
>W1810293990
PTHR01000002
Gammaproteobacteria
Klebsiella quasipneumoniae subsp. quasipneumoniae 1972/2978 [PTHR]
296905
296979
+
Gly
TCC
[ENA]
¡û
>W1810369020
PWAD01000021
Gammaproteobacteria
Klebsiella pneumoniae PMM475 [PWAD]
71638
71712
+
Gly
TCC
[ENA]
¡û
>W1810369151
PWAF01000041
Gammaproteobacteria
Klebsiella pneumoniae PM12640 [PWAF]
15903
15829
-
Gly
TCC
[ENA]
¡û
>W1810369196
PWAG01000001
Gammaproteobacteria
Klebsiella pneumoniae PM7109 [PWAG]
69924
69998
+
Gly
TCC
[ENA]
¡û
>W1810381150
PXKV01000006
Gammaproteobacteria
Klebsiella quasipneumoniae CRE30 [PXKV]
237252
237326
+
Gly
TCC
[ENA]
¡û
>W1810381817
PXLF01000082
Gammaproteobacteria
Klebsiella pneumoniae CRE18 [PXLF]
1408
1482
+
Gly
TCC
[ENA]
¡û
>W1810424434
PYUL01000042
Gammaproteobacteria
Klebsiella pneumoniae PM11304 [PYUL]
27429
27355
-
Gly
TCC
[ENA]
¡û
>W1810424475
PYUM01000001
Gammaproteobacteria
Klebsiella pneumoniae PM9016 [PYUM]
69923
69997
+
Gly
TCC
[ENA]
¡û
>W1810635229
QIUN01000008
Gammaproteobacteria
Klebsiella pneumoniae WUSM_KP_113 [QIUN]
151456
151530
+
Gly
TCC
[ENA]
¡û
>W1810760406
QPKC01000004
Gammaproteobacteria
Klebsiella oxytoca NK-1 [QPKC]
440338
440264
-
Gly
TCC
[ENA]
¡û
>C152000028
CP006738
Gammaproteobacteria
Klebsiella pneumoniae HK787 [CP006738]
3954455
3954381
-
Gly
TCC
[Ensembl]
¡û
>C151021095
CP007265
Gammaproteobacteria
Escherichia coli ST540 [CP007265]
3250229
3250155
-
Gly
TCC
[Ensembl]
¡û
>C151022479
CP007390
Gammaproteobacteria
Escherichia coli ST540 [CP007390]
1423062
1423136
+
Gly
TCC
[Ensembl]
¡û
>C151022575
CP007391
Gammaproteobacteria
Escherichia coli ST540 [CP007391]
1517837
1517911
+
Gly
TCC
[Ensembl]
¡û
>W1510075759
CDNT01000104
Gammaproteobacteria
Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 Urmite [CDNT]
1201
1275
+
Gly
TCC
[ENA]
¡û
>W1510076585
CDOT01000104
Gammaproteobacteria
Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 Urmite [CDOT]
1201
1275
+
Gly
TCC
[ENA]
¡û
>W1510724971
CXYS01000033
Gammaproteobacteria
Escherichia coli [CXYS]
23005
22931
-
Gly
TCC
[ENA]
¡û
>W1511365872
JSER01000060
Gammaproteobacteria
Klebsiella pneumoniae CCBH13327 [JSER]
29048
28974
-
Gly
TCC
[ENA]
¡û
>W1511394120
JTAX01000002
Gammaproteobacteria
Klebsiella pneumoniae FDAARGOS_84 [JTAX]
234384
234310
-
Gly
TCC
[ENA]
¡û
>W1511455858
JVHD01000001
Gammaproteobacteria
Klebsiella pneumoniae 436_KPNE [JVHD]
1952
1878
-
Gly
TCC
[ENA]
¡û
>W1511670585
LEYP01000010
Gammaproteobacteria
Klebsiella pneumoniae CHS201 [LEYP]
26540
26466
-
Gly
TCC
[ENA]
¡û
>W1610484568
FLBD01000017
Gammaproteobacteria
Klebsiella pneumoniae k1210 [FLBD]
3531
3605
+
Gly
TCC
[ENA]
¡û
>W1610485800
FLBV01000004
Gammaproteobacteria
Klebsiella variicola k1527 [FLBV]
301441
301515
+
Gly
TCC
[ENA]
¡û
>W1610486098
FLBZ01000005
Gammaproteobacteria
Klebsiella pneumoniae k1207 [FLBZ]
90646
90572
-
Gly
TCC
[ENA]
¡û
>W1610487561
FLCU01000007
Gammaproteobacteria
Klebsiella pneumoniae oxytoca [FLCU]
253897
253971
+
Gly
TCC
[ENA]
¡û
>W1610489411
FLDU01000002
Gammaproteobacteria
Klebsiella pneumoniae [FLDU]
283710
283784
+
Gly
TCC
[ENA]
¡û
>W1610490232
FLEF01000008
Gammaproteobacteria
Klebsiella pneumoniae oxytoca [FLEF]
3504
3430
-
Gly
TCC
[ENA]
¡û
>W1610490851
FLEO01000002
Gammaproteobacteria
Klebsiella pneumoniae [FLEO]
297108
297182
+
Gly
TCC
[ENA]
¡û
>W1610494863
FLGR01000002
Gammaproteobacteria
Klebsiella pneumoniae [FLGR]
215220
215146
-
Gly
TCC
[ENA]
¡û
>W1610495931
FLHG01000005
Gammaproteobacteria
Klebsiella variicola pneumoniae [FLHG]
253850
253924
+
Gly
TCC
[ENA]
¡û
>W1610497396
FLIA01000006
Gammaproteobacteria
Klebsiella pneumoniae [FLIA]
2414
2340
-
Gly
TCC
[ENA]
¡û
>W1610498038
FLIK01000002
Gammaproteobacteria
Klebsiella pneumoniae [FLIK]
282855
282929
+
Gly
TCC
[ENA]
¡û
>W1610498289
FLIN01000005
Gammaproteobacteria
Klebsiella pneumoniae [FLIN]
283606
283680
+
Gly
TCC
[ENA]
¡û
>W1610509625
FLVW01000020
Gammaproteobacteria
Klebsiella pneumoniae PB5 [FLVW]
5360
5434
+
Gly
TCC
[ENA]
¡û
>W1610510434
FLWI01000001
Gammaproteobacteria
Klebsiella pneumoniae PB298 [FLWI]
310980
311054
+
Gly
TCC
[ENA]
¡û
>W1610510577
FLWJ01000008
Gammaproteobacteria
Klebsiella pneumoniae PB28 [FLWJ]
25041
24967
-
Gly
TCC
[ENA]
¡û
>W1610510956
FLWO01000004
Gammaproteobacteria
Klebsiella pneumoniae PB395 [FLWO]
4057
4131
+
Gly
TCC
[ENA]
¡û
>W1610510989
FLWO01000016
Gammaproteobacteria
Klebsiella pneumoniae PB395 [FLWO]
43276
43350
+
Gly
TCC
[ENA]
¡û
>W1610513401
FLXU01000001
Gammaproteobacteria
Klebsiella quasipneumoniae W2-15-ERG14 [FLXU]
382742
382816
+
Gly
TCC
[ENA]
¡û
>W1611022912
LYWN01000060
Gammaproteobacteria
Klebsiella pneumoniae [LYWN]
16681
16755
+
Gly
TCC
[ENA]
¡û
>W1710481321
FLCU01000007
Gammaproteobacteria
Klebsiella pneumoniae oxytoca [FLCU]
253897
253971
+
Gly
TCC
[ENA]
¡û
>W1710482881
FLDU01000002
Gammaproteobacteria
Klebsiella pneumoniae [FLDU]
283710
283784
+
Gly
TCC
[ENA]
¡û
>W1710483702
FLEF01000008
Gammaproteobacteria
Klebsiella pneumoniae oxytoca [FLEF]
3504
3430
-
Gly
TCC
[ENA]
¡û
>W1710484321
FLEO01000002
Gammaproteobacteria
Klebsiella pneumoniae [FLEO]
297108
297182
+
Gly
TCC
[ENA]
¡û
>W1710488333
FLGR01000002
Gammaproteobacteria
Klebsiella pneumoniae [FLGR]
215220
215146
-
Gly
TCC
[ENA]
¡û
>W1710489401
FLHG01000005
Gammaproteobacteria
Klebsiella variicola pneumoniae [FLHG]
253850
253924
+
Gly
TCC
[ENA]
¡û
>W1710490866
FLIA01000006
Gammaproteobacteria
Klebsiella pneumoniae [FLIA]
2414
2340
-
Gly
TCC
[ENA]
¡û
>W1710491508
FLIK01000002
Gammaproteobacteria
Klebsiella pneumoniae [FLIK]
282855
282929
+
Gly
TCC
[ENA]
¡û
>W1710491759
FLIN01000005
Gammaproteobacteria
Klebsiella pneumoniae [FLIN]
283606
283680
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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