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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.436046 (57 seq.)
>W1710991218
LPXN01000002
Alphaproteobacteria
Oceanibaculum pacificum [LPXN]
52234
52160
-
Val
GAC
[ENA]
¡û
>W1711129955
LUUM01000246
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
42281
42207
-
Val
GAC
[ENA]
¡û
>W1711262662
LYXZ01000029
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
29750
29824
+
Val
GAC
[ENA]
¡û
>W1711628137
MPOB01000002
Alphaproteobacteria
Oceanibaculum nanhaiense L54-1-50 [MPOB]
95735
95661
-
Val
GAC
[ENA]
¡û
>W131045447
AMRL01000020
Alphaproteobacteria
Oceanibaculum indicum P24 [AMRL]
58967
59041
+
Val
GAC
[ENA]
¡û
>W131163819
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
307542
307616
+
Val
GAC
[ENA]
¡û
>W131166807
ARCT01000001
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
1879865
1879939
+
Val
GAC
[ENA]
¡û
>W131222249
AUBC01000014
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
73970
74044
+
Val
GAC
[ENA]
¡û
>WENV180037447
FVAA011070063
[FVAA] soil metagenome; Soil
99
25
-
Val
GAC
[ENA]
¢þ
>WENV180254377
OBEQ010625398
[OBEQ] groundwater metagenome; groundwater
177
251
+
Val
GAC
[ENA]
¢þ
>WENV180259134
OBEQ011075465
[OBEQ] groundwater metagenome; groundwater
1027
953
-
Val
GAC
[ENA]
¢þ
>WENV180272602
OBEQ012395781
[OBEQ] groundwater metagenome; groundwater
2953
3027
+
Val
GAC
[ENA]
¢þ
>WENV180321187
OBKQ01141572
[OBKQ] soil metagenome; Clay
132
206
+
Val
GAC
[ENA]
¢þ
>WENV180354635
OBLQ012012310
[OBLQ] soil metagenome; soil
113
39
-
Val
GAC
[ENA]
¢þ
>WENV181145582
OEHO01352878
[OEHO] metagenome; unknown
159
85
-
Val
GAC
[ENA]
¢þ
>W141188909
AYNA01000090
Alphaproteobacteria
Methylocystis sp. SB2 [AYNA]
37001
36927
-
Val
GAC
[ENA]
¡û
>WENV183663470
ORJL010287699
[ORJL] groundwater metagenome; groundwater
934
1008
+
Val
GAC
[ENA]
¢þ
>WENV183665901
ORJL010503185
[ORJL] groundwater metagenome; groundwater
458
532
+
Val
GAC
[ENA]
¢þ
>WENV183686229
ORMF010967445
[ORMF] groundwater metagenome; groundwater
79
5
-
Val
GAC
[ENA]
¢þ
>WENV183688911
ORMF011362057
[ORMF] groundwater metagenome; groundwater
2048
1974
-
Val
GAC
[ENA]
¢þ
>WENV183690270
ORMF011570162
[ORMF] groundwater metagenome; groundwater
8414
8488
+
Val
GAC
[ENA]
¢þ
>WENV183691901
ORMF011837147
[ORMF] groundwater metagenome; groundwater
5782
5708
-
Val
GAC
[ENA]
¢þ
>WENV183698339
OZSS01000554
[OZSS] metagenome; Seawater sample
5607
5681
+
Val
GAC
[ENA]
¢þ
>WENV183750300
PPFU01283028
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1675
1601
-
Val
GAC
[ENA]
¢þ
>WENV170003069
AGTN01217278
[AGTN] bioreactor metagenome; poplar biomass
55
129
+
Val
GAC
[ENA]
¢þ
>WENV170133863
CENU01059030
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
504
430
-
Val
GAC
[ENA]
¢þ
>WENV170553289
CXWK01013554
[CXWK] wastewater metagenome; activated sludge
1892
1818
-
Val
GAC
[ENA]
¢þ
>WENV170768347
LXNH01017435
[LXNH] seawater metagenome; marine seawater
124
50
-
Val
GAC
[ENA]
¢þ
>WENV170814426
MDSW01216862
[MDSW] marine metagenome; seawater
32769
32843
+
Val
GAC
[ENA]
¢þ
>WENV170947703
MEHZ010887414
[MEHZ] marine metagenome; marine surface water
170
244
+
Val
GAC
[ENA]
¢þ
>C181089656
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
1163261
1163187
-
Val
GAC
-
¡û
>C181177437
CP029353
Alphaproteobacteria
Azospirillum thermophilum CFH 70021 [CP029352, CP029353, CP029354, CP029355]
1787789
1787715
-
Val
GAC
-
¡û
>C191071864
CP030126
Alphaproteobacteria
Indioceanicola profundi SCSIO 08040 [CP030126]
1727278
1727204
-
Val
GAC
-
¡û
>C191087917
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
2861441
2861515
+
Val
GAC
-
¡û
>C191088075
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
2367758
2367832
+
Val
GAC
-
¡û
>C191118883
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
836374
836448
+
Val
GAC
-
¡û
>W141562724
JHZK01000008
Alphaproteobacteria
Afifella pfennigii DSM 17143 [JHZK]
91306
91232
-
Val
GAC
[ENA]
¡û
>W141733746
JNLC01000013
Alphaproteobacteria
Bosea sp. 117 [JNLC]
394364
394438
+
Val
GAC
[ENA]
¡û
>W141821190
JQNK01000002
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
343677
343751
+
Val
GAC
[ENA]
¡û
>W1910613031
LGQV01000020
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
142479
142405
-
Val
GAC
[ENA]
¡û
>W1910613281
LGQZ01000027
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
100179
100253
+
Val
GAC
[ENA]
¡û
>W1911139209
NOXS01000022
Alphaproteobacteria
Elstera cyanobacteriorum TH019 [NOXS]
32664
32590
-
Val
GAC
[ENA]
¡û
>W1911143646
NPBC01000007
Alphaproteobacteria
Afifella marina DSM 2698 [NPBC]
176001
176075
+
Val
GAC
[ENA]
¡û
>W1911768754
QXHE01000008
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
59596
59670
+
Val
GAC
[ENA]
¡û
>W1810222241
POQV01000005
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
343511
343585
+
Val
GAC
[ENA]
¡û
>W1810397185
PYDU01000003
Alphaproteobacteria
Methylocystis sp. MitZ-2018 [PYDU]
41167
41093
-
Val
GAC
[ENA]
¡û
>W1511563393
LABZ01000247
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
1522
1596
+
Val
GAC
[ENA]
¡û
>W1511569464
LAJY01000652
Alphaproteobacteria
Elstera litoralis Dia-1 [LAJY]
173
99
-
Val
GAC
[ENA]
¡û
>W1511569472
LAJY01000872
Alphaproteobacteria
Elstera litoralis Dia-1 [LAJY]
1588
1514
-
Val
GAC
[ENA]
¡û
>C121017697
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
1149458
1149532
+
Val
GAC
[Ensembl]
¡û
>C161040231
CP012156
Alphaproteobacteria
Hyphomonadaceae bacterium UKL13-1 [CP012156]
192638
192564
-
Val
GAC
-
¡û
>W121067967
AJTV01000003
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
66429
66355
-
Val
GAC
[ENA]
¡û
>W1610845890
LPXN01000002
Alphaproteobacteria
Oceanibaculum pacificum [LPXN]
52234
52160
-
Val
GAC
[ENA]
¡û
>W1610941028
LUUM01000246
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
42281
42207
-
Val
GAC
[ENA]
¡û
>W1611024529
LYXZ01000029
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
29750
29824
+
Val
GAC
[ENA]
¡û
>W1710508138
FMVW01000005
Alphaproteobacteria
Afifella marina DSM 2698 [FMVW]
145878
145804
-
Val
GAC
[ENA]
¡û
>W1710626708
JPIR01000063
Alphaproteobacteria
Azospirillum brasilense [JPIR]
5196
5270
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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