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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.436809 (23 seq.)
>W1710797265
LJSX01000007
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
138592
138665
+
Gln
CTG
[ENA]
¡û
>W1710874330
LMNN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
47117
47044
-
Gln
CTG
[ENA]
¡û
>W1710874436
LMNP01000024
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
33977
33904
-
Gln
CTG
[ENA]
¡û
>W1710874574
LMNS01000023
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
16842
16769
-
Gln
CTG
[ENA]
¡û
>W131051718
AMXU01000014
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
47176
47103
-
Gln
CTG
[ENA]
¡û
>PL171000335
CP001511
Alphaproteobacteria
Methylobacterium extorquens AM1 plasmid:megaplasmid
1162482
1162555
+
Gln
CTG
[ENA]
¡û
>C171092168
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
2266249
2266176
-
Gln
CTG
-
¡û
>C171115178
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
813538
813611
+
Gln
CTG
-
¡û
>WENV180353951
OBLQ011225432
[OBLQ] soil metagenome; soil
118
45
-
Gln
CTG
[ENA]
¢þ
>WENV181228050
OFDN01129959
[OFDN] hot springs metagenome; Water
267
194
-
Gln
CTG
[ENA]
¢þ
>C08006500
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
4837976
4838049
+
Gln
CTG
[Ensembl]
¡û
>WENV170683294
LFIK01008403
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
6843
6916
+
Gln
CTG
[ENA]
¢þ
>C09107430
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
5003234
5003307
+
Gln
CTG
[Ensembl]
¡û
>C09107516
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
5288636
5288709
+
Gln
CTG
[Ensembl]
¡û
>C09107617
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
4901299
4901372
+
Gln
CTG
[Ensembl]
¡û
>SRA1015924
SRR023846.264539
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
161
234
+
Gln
CTG
[SRA]
>W1610516218
FMBM01000003
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
3669
3742
+
Gln
CTG
[ENA]
¡û
>W1610661222
LJSX01000007
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
138592
138665
+
Gln
CTG
[ENA]
¡û
>W1610736676
LMNN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
47117
47044
-
Gln
CTG
[ENA]
¡û
>W1610736782
LMNP01000024
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
33977
33904
-
Gln
CTG
[ENA]
¡û
>W1710501498
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
2358918
2358991
+
Gln
CTG
[ENA]
¡û
>W1710501509
FMBM01000003
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
3669
3742
+
Gln
CTG
[ENA]
¡û
>W1710567571
FOSV01000040
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
18426
18499
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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