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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.437178 (110 seq.)
>W1711310755
MARQ01000078
Bacillota
Clostridium perfringens [MARQ]
18333
18259
-
Glu
TTC
[ENA]
¡û
>W1711310758
MARQ01000078
Bacillota
Clostridium perfringens [MARQ]
18081
18007
-
Glu
TTC
[ENA]
¡û
>W1711310761
MARQ01000078
Bacillota
Clostridium perfringens [MARQ]
17828
17754
-
Glu
TTC
[ENA]
¡û
>W1711310780
MARQ01000088
Bacillota
Clostridium perfringens [MARQ]
519
593
+
Glu
TTC
[ENA]
¡û
>W1711310981
MART01000014
Bacillota
Clostridium perfringens [MART]
148
74
-
Glu
TTC
[ENA]
¡û
>W1711310991
MART01000031
Bacillota
Clostridium perfringens [MART]
229
303
+
Glu
TTC
[ENA]
¡û
>W1711310994
MART01000031
Bacillota
Clostridium perfringens [MART]
482
556
+
Glu
TTC
[ENA]
¡û
>W1711311034
MART01000076
Bacillota
Clostridium perfringens [MART]
1559
1633
+
Glu
TTC
[ENA]
¡û
>W1711311194
MARW01000031
Bacillota
Clostridium perfringens [MARW]
4076
4150
+
Glu
TTC
[ENA]
¡û
>W1711311220
MARW01000051
Bacillota
Clostridium perfringens [MARW]
28842
28768
-
Glu
TTC
[ENA]
¡û
>W1711311223
MARW01000051
Bacillota
Clostridium perfringens [MARW]
28589
28515
-
Glu
TTC
[ENA]
¡û
>W1711311251
MARW01000066
Bacillota
Clostridium perfringens [MARW]
232
306
+
Glu
TTC
[ENA]
¡û
>W1711311546
MASA01000053
Bacillota
Clostridium perfringens [MASA]
90911
90837
-
Glu
TTC
[ENA]
¡û
>W1711311565
MASA01000067
Bacillota
Clostridium perfringens [MASA]
180196
180122
-
Glu
TTC
[ENA]
¡û
>W1711311568
MASA01000067
Bacillota
Clostridium perfringens [MASA]
179944
179870
-
Glu
TTC
[ENA]
¡û
>W1711311571
MASA01000067
Bacillota
Clostridium perfringens [MASA]
179691
179617
-
Glu
TTC
[ENA]
¡û
>W1711311579
MASB01000014
Bacillota
Clostridium perfringens [MASB]
4078
4152
+
Glu
TTC
[ENA]
¡û
>W1711311582
MASB01000014
Bacillota
Clostridium perfringens [MASB]
4330
4404
+
Glu
TTC
[ENA]
¡û
>W1711311595
MASB01000033
Bacillota
Clostridium perfringens [MASB]
221
295
+
Glu
TTC
[ENA]
¡û
>W1711311643
MASB01000056
Bacillota
Clostridium perfringens [MASB]
106915
106841
-
Glu
TTC
[ENA]
¡û
>C006402
CP000246
Bacillota
Clostridium perfringens ATCC 13124 [CP000246]
687930
688004
+
Glu
TTC
[Ensembl]
¡û
>C006404
CP000246
Bacillota
Clostridium perfringens ATCC 13124 [CP000246]
3216313
3216239
-
Glu
TTC
[Ensembl]
¡û
>C006407
CP000246
Bacillota
Clostridium perfringens ATCC 13124 [CP000246]
3216061
3215987
-
Glu
TTC
[Ensembl]
¡û
>C006410
CP000246
Bacillota
Clostridium perfringens ATCC 13124 [CP000246]
3215808
3215734
-
Glu
TTC
[Ensembl]
¡û
>WENV180094911
MTBK01038756
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
571
645
+
Glu
TTC
[ENA]
¢þ
>WENV180226831
OBBS01007231
[OBBS] human gut metagenome; Infant 2 DOL 17 gut
136
62
-
Glu
TTC
[ENA]
¢þ
>WENV180228146
OBBW01000129
[OBBW] human gut metagenome; Infant 2 DOL 28 gut
51938
52012
+
Glu
TTC
[ENA]
¢þ
>WENV180228196
OBBW01000258
[OBBW] human gut metagenome; Infant 2 DOL 28 gut
255
329
+
Glu
TTC
[ENA]
¢þ
>WENV180457603
OBXU01010815
[OBXU] human gut metagenome; faeces
128
202
+
Glu
TTC
[ENA]
¢þ
>WENV180482897
OBZG01031133
[OBZG] human gut metagenome; faeces
277
351
+
Glu
TTC
[ENA]
¢þ
>WENV180556531
OCJS01000205
[OCJS] human gut metagenome; Infant 2 DOL 18 gut
61
135
+
Glu
TTC
[ENA]
¢þ
>WENV180556554
OCJS01000344
[OCJS] human gut metagenome; Infant 2 DOL 18 gut
4120
4194
+
Glu
TTC
[ENA]
¢þ
>WENV180556800
OCJT01000834
[OCJT] human gut metagenome; Infant 2 DOL 19 gut
4036
4110
+
Glu
TTC
[ENA]
¢þ
>WENV180556824
OCJT01001371
[OCJT] human gut metagenome; Infant 2 DOL 19 gut
1859
1785
-
Glu
TTC
[ENA]
¢þ
>W08001379
ABDU01000009
Bacillota
Clostridium perfringens C str. JGS1495 [ABDU]
42859
42788
-
Glu
TTC
[ENA]
¡û
>W08001382
ABDU01000009
Bacillota
Clostridium perfringens C str. JGS1495 [ABDU]
42607
42536
-
Glu
TTC
[ENA]
¡û
>W08001385
ABDU01000009
Bacillota
Clostridium perfringens C str. JGS1495 [ABDU]
42354
42283
-
Glu
TTC
[ENA]
¡û
>W08001389
ABDU01000014
Bacillota
Clostridium perfringens C str. JGS1495 [ABDU]
4214
4288
+
Glu
TTC
[ENA]
¡û
>W08001692
ABDX01000028
Bacillota
Clostridium perfringens CPE str. F4969 [ABDX]
4416
4490
+
Glu
TTC
[ENA]
¡û
>W08001693
ABDX01000033
Bacillota
Clostridium perfringens CPE str. F4969 [ABDX]
4151
4225
+
Glu
TTC
[ENA]
¡û
>W08001696
ABDX01000033
Bacillota
Clostridium perfringens CPE str. F4969 [ABDX]
4403
4477
+
Glu
TTC
[ENA]
¡û
>W08001699
ABDX01000033
Bacillota
Clostridium perfringens CPE str. F4969 [ABDX]
4656
4730
+
Glu
TTC
[ENA]
¡û
>W08009061
ABOO01000021
Bacillota
Clostridium perfringens D str. JGS1721 [ABOO]
4972
5046
+
Glu
TTC
[ENA]
¡û
>W08009079
ABOO01000039
Bacillota
Clostridium perfringens D str. JGS1721 [ABOO]
30861
30790
-
Glu
TTC
[ENA]
¡û
>W08009082
ABOO01000039
Bacillota
Clostridium perfringens D str. JGS1721 [ABOO]
30609
30538
-
Glu
TTC
[ENA]
¡û
>W08009085
ABOO01000039
Bacillota
Clostridium perfringens D str. JGS1721 [ABOO]
30356
30285
-
Glu
TTC
[ENA]
¡û
>WENV181200184
OERJ01003980
[OERJ] metagenome; water of meat washing
60
134
+
Glu
TTC
[ENA]
¢þ
>WENV181328156
OFLS01000688
[OFLS] metagenome; faeces
4056
4130
+
Glu
TTC
[ENA]
¢þ
>WENV181329204
OFLW01000046
[OFLW] metagenome; faeces
82
156
+
Glu
TTC
[ENA]
¢þ
>WENV181329247
OFLW01000094
[OFLW] metagenome; faeces
50456
50530
+
Glu
TTC
[ENA]
¢þ
>WENV181526822
OGHJ01054907
[OGHJ] metagenome; Human gut stool
190
116
-
Glu
TTC
[ENA]
¢þ
>WENV181552628
OGIO01028520
[OGIO] metagenome; Human gut stool
63
137
+
Glu
TTC
[ENA]
¢þ
>WENV181556250
OGIU01006345
[OGIU] metagenome; Human gut stool
3396
3470
+
Glu
TTC
[ENA]
¢þ
>WENV181571864
OGJP01012263
[OGJP] metagenome; Human gut stool
641
715
+
Glu
TTC
[ENA]
¢þ
>WENV181814661
OGTH01000088
[OGTH] human gut metagenome; fecal sample 4 from infant 6
85052
84978
-
Glu
TTC
[ENA]
¢þ
>WENV181814840
OGTH01000437
[OGTH] human gut metagenome; fecal sample 4 from infant 6
171
245
+
Glu
TTC
[ENA]
¢þ
>WENV182239665
OHSB01009778
[OHSB] human gut metagenome; feces
936
1008
+
Glu
TTC
[ENA]
¢þ
>WENV182721204
OJPO01002489
[OJPO] human gut metagenome; stool sample
2458
2384
-
Glu
TTC
[ENA]
¢þ
>WENV182721298
OJPO01004963
[OJPO] human gut metagenome; stool sample
108
182
+
Glu
TTC
[ENA]
¢þ
>WENV182807159
OJVV01000883
[OJVV] human gut metagenome; human gut
608
682
+
Glu
TTC
[ENA]
¢þ
>WENV182809614
OJWR01007615
[OJWR] human gut metagenome; human gut
61
135
+
Glu
TTC
[ENA]
¢þ
>WENV182820333
OKAL01000968
[OKAL] human gut metagenome; human gut
5152
5226
+
Glu
TTC
[ENA]
¢þ
>WENV182824596
OKCE01000608
[OKCE] human gut metagenome; human gut
486
560
+
Glu
TTC
[ENA]
¢þ
>WENV182846438
OKJM01000667
[OKJM] human gut metagenome; human gut
557
631
+
Glu
TTC
[ENA]
¢þ
>WENV182846777
OKJR01002530
[OKJR] human gut metagenome; human gut
133
59
-
Glu
TTC
[ENA]
¢þ
>WENV182856640
OKNP01000577
[OKNP] human gut metagenome; human gut
777
851
+
Glu
TTC
[ENA]
¢þ
>WENV182857727
OKNY01000968
[OKNY] human gut metagenome; human gut
2076
2150
+
Glu
TTC
[ENA]
¢þ
>WENV182888319
OKSE01000211
[OKSE] human gut metagenome; faeces
4038
4112
+
Glu
TTC
[ENA]
¢þ
>WENV182962040
OKWN01000001
[OKWN] human gut metagenome; stool
2054358
2054284
-
Glu
TTC
[ENA]
¢þ
>WENV182962496
OKWN01001518
[OKWN] human gut metagenome; stool
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV183021331
OLFK01006443
[OLFK] human gut metagenome; human gut
374
300
-
Glu
TTC
[ENA]
¢þ
>WENV183128527
OLNZ01009733
[OLNZ] human gut metagenome; faeces
75
1
-
Glu
TTC
[ENA]
¢þ
>WENV183132040
OLOB01000309
[OLOB] human gut metagenome; faeces
75
1
-
Glu
TTC
[ENA]
¢þ
>WENV183360371
OLXI01016996
[OLXI] human gut metagenome; feces
1554
1628
+
Glu
TTC
[ENA]
¢þ
>C181210579
LS483393
Bacillota
Clostridium perfringens NCTC13170 [LS483393]
723260
723334
+
Glu
TTC
-
¡û
>C181210580
LS483393
Bacillota
Clostridium perfringens NCTC13170 [LS483393]
3250355
3250281
-
Glu
TTC
-
¡û
>C181210583
LS483393
Bacillota
Clostridium perfringens NCTC13170 [LS483393]
3250101
3250027
-
Glu
TTC
-
¡û
>C181210586
LS483393
Bacillota
Clostridium perfringens NCTC13170 [LS483393]
3249848
3249774
-
Glu
TTC
-
¡û
>W09111316
ABWP01000084
Bacillota
Peptacetobacter hiranonis DSM 13275 [ABWP]
12191
12265
+
Glu
TTC
[ENA]
¡û
>W1911723319
QRFR01000009
Bacillota
Clostridium perfringens 79385-3 [QRFR]
6
80
+
Glu
TTC
[ENA]
¡û
>W1911723340
QRFR01000030
Bacillota
Clostridium perfringens 79385-3 [QRFR]
3983
4057
+
Glu
TTC
[ENA]
¡û
>W1911723343
QRFR01000030
Bacillota
Clostridium perfringens 79385-3 [QRFR]
4235
4309
+
Glu
TTC
[ENA]
¡û
>W1911723346
QRFR01000030
Bacillota
Clostridium perfringens 79385-3 [QRFR]
4489
4563
+
Glu
TTC
[ENA]
¡û
>W1911723667
QRFW01000009
Bacillota
Clostridium perfringens 83921_3_3 [QRFW]
7
81
+
Glu
TTC
[ENA]
¡û
>W1911723700
QRFW01000079
Bacillota
Clostridium perfringens 83921_3_3 [QRFW]
3983
4057
+
Glu
TTC
[ENA]
¡û
>W1911723735
QRFX01000008
Bacillota
Clostridium perfringens 83921_3_4 [QRFX]
6
80
+
Glu
TTC
[ENA]
¡û
>W1911723768
QRFX01000077
Bacillota
Clostridium perfringens 83921_3_4 [QRFX]
248
174
-
Glu
TTC
[ENA]
¡û
>W1810178796
PJSI01000005
Bacillota
Clostridium perfringens TAM-NE46 [PJSI]
50609
50683
+
Glu
TTC
[ENA]
¡û
>W1810178831
PJSI01000016
Bacillota
Clostridium perfringens TAM-NE46 [PJSI]
277
351
+
Glu
TTC
[ENA]
¡û
>W1810179089
PJSM01000001
Bacillota
Clostridium perfringens 67 [PJSM]
1602083
1602009
-
Glu
TTC
[ENA]
¡û
>W1810179107
PJSM01000004
Bacillota
Clostridium perfringens 67 [PJSM]
51000
51074
+
Glu
TTC
[ENA]
¡û
>W1810179110
PJSM01000004
Bacillota
Clostridium perfringens 67 [PJSM]
51252
51326
+
Glu
TTC
[ENA]
¡û
>W1810179113
PJSM01000004
Bacillota
Clostridium perfringens 67 [PJSM]
51505
51579
+
Glu
TTC
[ENA]
¡û
>W1810179201
PJSN01000002
Bacillota
Clostridium perfringens 37 [PJSN]
499
573
+
Glu
TTC
[ENA]
¡û
>W1810179204
PJSN01000006
Bacillota
Clostridium perfringens 37 [PJSN]
51003
51077
+
Glu
TTC
[ENA]
¡û
>W1810179207
PJSN01000006
Bacillota
Clostridium perfringens 37 [PJSN]
51255
51329
+
Glu
TTC
[ENA]
¡û
>W1810179210
PJSN01000006
Bacillota
Clostridium perfringens 37 [PJSN]
51508
51582
+
Glu
TTC
[ENA]
¡û
>W1810179749
PJSU01000067
Bacillota
Clostridium perfringens NobL1 [PJSU]
19061
18987
-
Glu
TTC
[ENA]
¡û
>W1810179752
PJSU01000067
Bacillota
Clostridium perfringens NobL1 [PJSU]
18809
18735
-
Glu
TTC
[ENA]
¡û
>W1810179755
PJSU01000067
Bacillota
Clostridium perfringens NobL1 [PJSU]
18556
18482
-
Glu
TTC
[ENA]
¡û
>W1810179774
PJSU01000109
Bacillota
Clostridium perfringens NobL1 [PJSU]
146
220
+
Glu
TTC
[ENA]
¡û
>W1810180682
PJTG01000004
Bacillota
Clostridium perfringens WER-NE36 [PJTG]
4593
4667
+
Glu
TTC
[ENA]
¡û
>W1810180982
PJTK01000001
Bacillota
Clostridium perfringens TAM-NE43 [PJTK]
2129755
2129681
-
Glu
TTC
[ENA]
¡û
>W1810181011
PJTK01000008
Bacillota
Clostridium perfringens TAM-NE43 [PJTK]
30421
30347
-
Glu
TTC
[ENA]
¡û
>W1810181014
PJTK01000008
Bacillota
Clostridium perfringens TAM-NE43 [PJTK]
30169
30095
-
Glu
TTC
[ENA]
¡û
>W1810181050
PJTK01000026
Bacillota
Clostridium perfringens TAM-NE43 [PJTK]
246
320
+
Glu
TTC
[ENA]
¡û
>W1810875745
QUGE01000021
Bacillota
Peptoclostridium sp. AF21-18 [QUGE]
21090
21016
-
Glu
TTC
[ENA]
¡û
>W121003567
AFES01000014
Bacillota
Clostridium perfringens F262 [AFES]
124
198
+
Glu
TTC
[ENA]
¡û
>W121003621
AFES01000040
Bacillota
Clostridium perfringens F262 [AFES]
15256
15182
-
Glu
TTC
[ENA]
¡û
>W121003624
AFES01000040
Bacillota
Clostridium perfringens F262 [AFES]
15004
14930
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK