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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.438662 (20 seq.)
>W1711089362
LSZO01000152
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
20032
20106
+
Gln
TTG
[ENA]
¡û
>WENV170315134
CESO01070596
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
136
210
+
Gln
TTG
[ENA]
¢þ
>WENV170721064
LSQX01177988
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
25438
25512
+
Gln
TTG
[ENA]
¢þ
>WENV170726368
LSQX01377372
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9433
9359
-
Gln
TTG
[ENA]
¢þ
>C191044780
CP026512
Gammaproteobacteria
Candidatus Pseudomonas adelgestsugas [CP026512]
675811
675737
-
Gln
TTG
-
¡û
>C191053212
CP027726
Gammaproteobacteria
Pseudomonas orientalis R4-35-08 [CP027726]
849200
849126
-
Gln
TTG
-
¡û
>C191054431
CP027745
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca K27 [CP027745]
5751482
5751556
+
Gln
TTG
-
¡û
>C191054457
CP027745
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca K27 [CP027745]
4630102
4630028
-
Gln
TTG
-
¡û
>C191089502
CP032419
Gammaproteobacteria
Pseudomonas cavernae K2W31S-8 [CP032419]
1011451
1011377
-
Gln
TTG
-
¡û
>C191089503
CP032419
Gammaproteobacteria
Pseudomonas cavernae K2W31S-8 [CP032419]
1011323
1011249
-
Gln
TTG
-
¡û
>C191118785
CP034078
Gammaproteobacteria
Pseudomonas syringae pv. pisi str. PP1 [CP034078]
1196602
1196528
-
Gln
TTG
-
¡û
>C191170563
CP039631
Gammaproteobacteria
Pseudomonas veronii Pvy [CP039631]
828375
828449
+
Gln
TTG
-
¡û
>C191207853
LR134342
Gammaproteobacteria
Pseudomonas aeruginosa NCTC10728 [LR134342]
1928902
1928976
+
Gln
TTG
-
¡û
>C191210407
LR134393
Gammaproteobacteria
Pseudomonas taetrolens NCTC8067 [LR134393]
2292542
2292616
+
Gln
TTG
-
¡û
>C191210409
LR134393
Gammaproteobacteria
Pseudomonas taetrolens NCTC8067 [LR134393]
4134106
4134180
+
Gln
TTG
-
¡û
>W1910504974
FYDV01000001
Gammaproteobacteria
Pseudomonas sp. Irchel s3a18 [FYDV]
351235
351161
-
Gln
TTG
[ENA]
¡û
>W1910505024
FYDV01000021
Gammaproteobacteria
Pseudomonas sp. Irchel s3a18 [FYDV]
59709
59783
+
Gln
TTG
[ENA]
¡û
>W1610923740
LSZO01000152
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
20032
20106
+
Gln
TTG
[ENA]
¡û
>W1710569022
FOUA01000010
Gammaproteobacteria
Halopseudomonas bauzanensis [FOUA]
12838
12764
-
Gln
TTG
[ENA]
¡û
>W1710574247
FOYD01000001
Gammaproteobacteria
Halopseudomonas formosensis [FOYD]
13203
13129
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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