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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.438672 (25 seq.)
>C171033045
CP014689
Alphaproteobacteria
Gluconobacter albidus TMW2.1191 [CP014689]
2936677
2936603
-
Gln
TTG
-
¡û
>C000482
CP000697
Alphaproteobacteria
Acidiphilium cryptum JF-5 [CP000697]
829736
829810
+
Gln
TTG
[Ensembl]
¡û
>C010071
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
1240835
1240761
-
Gln
TTG
[Ensembl]
¡û
>WENV170649468
JRYC01010043
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
2728
2654
-
Gln
TTG
[ENA]
¢þ
>W141462242
JFHO01000032
Alphaproteobacteria
Acidiphilium sp. JA12-A1 [JFHO]
40995
41069
+
Gln
TTG
[ENA]
¡û
>C181221219
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
1240843
1240769
-
Gln
TTG
-
¡û
>C191100524
CP033087
Alphaproteobacteria
Commensalibacter melissae AMU001 [CP033087]
234952
234878
-
Gln
TTG
-
¡û
>C191157826
CP038141
Alphaproteobacteria
Swingsia samuiensis AH83 [CP038141]
1040322
1040248
-
Gln
TTG
-
¡û
>W1910181396
BJLY01000003
Alphaproteobacteria
Gluconobacter roseus NBRC 3990 [BJLY]
20283
20357
+
Gln
TTG
[ENA]
¡û
>W1910183166
BJNM01000006
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
21798
21872
+
Gln
TTG
[ENA]
¡û
>W1810000813
BEWP01000013
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
26931
26857
-
Gln
TTG
[ENA]
¡û
>W1810604045
QGLT01000006
Alphaproteobacteria
Commensalibacter melissae ESL0284 [QGLT]
24696
24622
-
Gln
TTG
[ENA]
¡û
>C151006209
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
1358140
1358066
-
Gln
TTG
[Ensembl]
¡û
>W121016337
AGQV01000006
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
138684
138610
-
Gln
TTG
[ENA]
¡û
>W1610624112
LHZD01000008
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
21824
21898
+
Gln
TTG
[ENA]
¡û
>W1610624160
LHZE01000056
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
21838
21912
+
Gln
TTG
[ENA]
¡û
>W1610624257
LHZG01000154
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
7432
7358
-
Gln
TTG
[ENA]
¡û
>W1610624659
LHZP01000014
Alphaproteobacteria
Gluconobacter roseus [LHZP]
20315
20389
+
Gln
TTG
[ENA]
¡û
>W1610624753
LHZR01000098
Alphaproteobacteria
Gluconobacter albidus [LHZR]
18651
18725
+
Gln
TTG
[ENA]
¡û
>W1710624610
JOPB01000023
Alphaproteobacteria
Commensalibacter intestini [JOPB]
63569
63495
-
Gln
TTG
[ENA]
¡û
>W1710755230
LHZD01000008
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
21824
21898
+
Gln
TTG
[ENA]
¡û
>W1710755278
LHZE01000056
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
21838
21912
+
Gln
TTG
[ENA]
¡û
>W1710755375
LHZG01000154
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
7432
7358
-
Gln
TTG
[ENA]
¡û
>W1710755777
LHZP01000014
Alphaproteobacteria
Gluconobacter roseus [LHZP]
20315
20389
+
Gln
TTG
[ENA]
¡û
>W1710755871
LHZR01000098
Alphaproteobacteria
Gluconobacter albidus [LHZR]
18651
18725
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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