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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.439135 (74 seq.)
>W1710917558
LNWC01000038
Alphaproteobacteria
Tritonibacter mobilis [LNWC]
70197
70271
+
Val
CAC
[ENA]
¡û
>W1710917681
LNWF01000011
Alphaproteobacteria
Tritonibacter mobilis [LNWF]
72669
72743
+
Val
CAC
[ENA]
¡û
>W1710918065
LNWN01000025
Alphaproteobacteria
Tritonibacter mobilis [LNWN]
72669
72743
+
Val
CAC
[ENA]
¡û
>W1710918642
LNWZ01000012
Alphaproteobacteria
Tritonibacter mobilis [LNWZ]
72982
73056
+
Val
CAC
[ENA]
¡û
>W1710918835
LNXD01000026
Alphaproteobacteria
Tritonibacter mobilis [LNXD]
72669
72743
+
Val
CAC
[ENA]
¡û
>W1710919023
LNXH01000011
Alphaproteobacteria
Tritonibacter mobilis [LNXH]
72211
72285
+
Val
CAC
[ENA]
¡û
>W1710987785
LPUY01000077
Alphaproteobacteria
Tritonibacter horizontis O3.65 [LPUY]
64832
64906
+
Val
CAC
[ENA]
¡û
>W1711054790
LRUC01000003
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
57312
57386
+
Val
CAC
[ENA]
¡û
>W1711175253
LWEQ01000125
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
7109
7183
+
Val
CAC
[ENA]
¡û
>W1711177160
LWFW01000434
Alphaproteobacteria
Sulfitobacter sp. HI0082 HI0082 [LWFW]
319
245
-
Val
CAC
[ENA]
¡û
>W1711177209
LWFW01001979
Alphaproteobacteria
Sulfitobacter sp. HI0082 HI0082 [LWFW]
5442
5368
-
Val
CAC
[ENA]
¡û
>W1711621313
MPDA01000001
Alphaproteobacteria
Roseobacter sp. MedPE-SWde [MPDA]
210273
210347
+
Val
CAC
[ENA]
¡û
>W1711709203
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
3610255
3610181
-
Val
CAC
[ENA]
¡û
>W1711709236
MSYQ01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYQ]
3674526
3674452
-
Val
CAC
[ENA]
¡û
>WENV011448
AACY020311138
Marine microbial communities from Global Ocean Sampling (GOS)
1803
1729
-
Val
CAC
[ENA]
>C171092091
CP019312
Alphaproteobacteria
Tateyamaria omphalii DOK1-4 [CP019312]
1150542
1150616
+
Val
CAC
-
¡û
>W131222999
AUBS01000004
Alphaproteobacteria
Pseudodonghicola xiamenensis DSM 18339 [AUBS]
95361
95435
+
Val
CAC
[ENA]
¡û
>W131241997
BASI01000001
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
1355300
1355374
+
Val
CAC
[ENA]
¡û
>w012731
AAMS01000003
Alphaproteobacteria
Yoonia vestfoldensis SKA53 [AAMS]
310217
310293
+
Val
CAC
[ENA]
¡û
>w012546
AAMO01000012
Alphaproteobacteria
Pseudooceanicola batsensis HTCC2597 [AAMO]
119372
119301
-
Val
CAC
[ENA]
¡û
>WENV180042374
LQAE01009152
[LQAE] bioreactor metagenome; bioreactor_1 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
78
152
+
Val
CAC
[ENA]
¢þ
>WENV180376648
OBOM01046946
[OBOM] marine metagenome; Seawater
260
186
-
Val
CAC
[ENA]
¢þ
>WENV181416581
OGCL01106949
[OGCL] hot springs metagenome; Hot spring water
466
540
+
Val
CAC
[ENA]
¢þ
>C08004199
CP000830
Alphaproteobacteria
Dinoroseobacter shibae DFL 12 = DSM 16493 [CP000830]
1844033
1843962
-
Val
CAC
[Ensembl]
¡û
>WENV183704885
PDWI01000731
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
23911
23837
-
Val
CAC
[ENA]
¢þ
>WENV183705375
PDWI01001458
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
29042
28968
-
Val
CAC
[ENA]
¢þ
>WENV170024332
BCQL01043617
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
408
334
-
Val
CAC
[ENA]
¢þ
>WENV170121176
CENL01054639
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4295
4221
-
Val
CAC
[ENA]
¢þ
>WENV170152195
CEOE01050561
[CEOE] marine metagenome genome assembly TARA_025_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
283
209
-
Val
CAC
[ENA]
¢þ
>WENV170347918
CETG01171709
[CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
373
447
+
Val
CAC
[ENA]
¢þ
>WENV170646354
JQGR01000133
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
11177
11251
+
Val
CAC
[ENA]
¢þ
>WENV170727334
LULE01000002
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
519196
519270
+
Val
CAC
[ENA]
¢þ
>WENV170762233
LUMW01002683
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
1973
1899
-
Val
CAC
[ENA]
¢þ
>W09101512
AAFG02000002
Alphaproteobacteria
Ruegeria sp. TM1040 TM1040 [AAFG]
218389
218463
+
Val
CAC
[ENA]
¡û
>C191083216
CP031952
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP031952]
2142290
2142216
-
Val
CAC
-
¡û
>C191083274
CP031956
Alphaproteobacteria
Phaeobacter sp. LSS9 [CP031956]
1192837
1192763
-
Val
CAC
-
¡û
>W1910442827
FWFO01000001
Alphaproteobacteria
Falsiruegeria litorea R37 CECT 7639 [FWFO]
1659640
1659714
+
Val
CAC
[ENA]
¡û
>W1910442903
FWFP01000011
Alphaproteobacteria
Ruegeria meonggei CECT 8411 [FWFP]
24362
24436
+
Val
CAC
[ENA]
¡û
>W1910808404
MUAV01000020
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
48747
48673
-
Val
CAC
[ENA]
¡û
>W1810101751
PGTD01000015
Alphaproteobacteria
Pseudooceanicola antarcticus Ar-45 [PGTD]
273249
273323
+
Val
CAC
[ENA]
¡û
>W1810504531
QBKZ01000023
Alphaproteobacteria
Mangrovicoccus ximenensis T1lg56 [QBKZ]
67010
67084
+
Val
CAC
[ENA]
¡û
>W1810722962
QNVX01000006
Alphaproteobacteria
Rhodovulum sp. BSW8 [QNVX]
41847
41921
+
Val
CAC
[ENA]
¡û
>W1510650717
CVRL01000010
Alphaproteobacteria
Phaeobacter italicus CECT 7321 [CVRL]
20473
20547
+
Val
CAC
[ENA]
¡û
>W1511482572
JWLC01000014
Alphaproteobacteria
Leisingera sp. ANG-M1 [JWLC]
59489
59415
-
Val
CAC
[ENA]
¡û
>W1511482609
JWLD01000016
Alphaproteobacteria
Leisingera sp. ANG-Vp [JWLD]
41337
41411
+
Val
CAC
[ENA]
¡û
>W1511482649
JWLE01000001
Alphaproteobacteria
Leisingera sp. ANG-DT [JWLE]
145394
145468
+
Val
CAC
[ENA]
¡û
>W1511482762
JWLG01000007
Alphaproteobacteria
Leisingera sp. ANG-M6 [JWLG]
106516
106442
-
Val
CAC
[ENA]
¡û
>W1511482859
JWLI01000001
Alphaproteobacteria
Leisingera sp. ANG-M7 [JWLI]
342890
342816
-
Val
CAC
[ENA]
¡û
>WENV044587
AACY022434999
Marine microbial communities from Global Ocean Sampling (GOS)
519
593
+
Val
CAC
[ENA]
>W1511583802
LAUK01000003
Alphaproteobacteria
Nautella sp. ECSMB14104 [LAUK]
124592
124518
-
Val
CAC
[ENA]
¡û
>C161001437
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
404570
404644
+
Val
CAC
[Ensembl]
¡û
>C161047260
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
1494976
1495050
+
Val
CAC
-
¡û
>W1610092521
CYPS01000008
Alphaproteobacteria
Ruegeria atlantica [CYPS]
107644
107570
-
Val
CAC
[ENA]
¡û
>W1610641249
LJAK01000004
Alphaproteobacteria
Loktanella sp. 3ANDIMAR09 [LJAK]
44611
44537
-
Val
CAC
[ENA]
¡û
>W1610775456
LNWC01000038
Alphaproteobacteria
Tritonibacter mobilis [LNWC]
70197
70271
+
Val
CAC
[ENA]
¡û
>W1610775579
LNWF01000011
Alphaproteobacteria
Tritonibacter mobilis [LNWF]
72669
72743
+
Val
CAC
[ENA]
¡û
>W1610775963
LNWN01000025
Alphaproteobacteria
Tritonibacter mobilis [LNWN]
72669
72743
+
Val
CAC
[ENA]
¡û
>W1610776540
LNWZ01000012
Alphaproteobacteria
Tritonibacter mobilis [LNWZ]
72982
73056
+
Val
CAC
[ENA]
¡û
>W1610776733
LNXD01000026
Alphaproteobacteria
Tritonibacter mobilis [LNXD]
72669
72743
+
Val
CAC
[ENA]
¡û
>W1610776921
LNXH01000011
Alphaproteobacteria
Tritonibacter mobilis [LNXH]
72211
72285
+
Val
CAC
[ENA]
¡û
>WENV075643
AACY024046482
Marine microbial communities from Global Ocean Sampling (GOS)
174
248
+
Val
CAC
[ENA]
>W1610842729
LPUY01000077
Alphaproteobacteria
Tritonibacter horizontis O3.65 [LPUY]
64832
64906
+
Val
CAC
[ENA]
¡û
>W1610895836
LRUC01000003
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
57312
57386
+
Val
CAC
[ENA]
¡û
>W1610983566
LWEQ01000125
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
7109
7183
+
Val
CAC
[ENA]
¡û
>W1610985473
LWFW01000434
Alphaproteobacteria
Sulfitobacter sp. HI0082 HI0082 [LWFW]
319
245
-
Val
CAC
[ENA]
¡û
>W1610985522
LWFW01001979
Alphaproteobacteria
Sulfitobacter sp. HI0082 HI0082 [LWFW]
5442
5368
-
Val
CAC
[ENA]
¡û
>W1710015436
AQQR01000003
Alphaproteobacteria
Marinibacterium profundimaris [AQQR]
367137
367063
-
Val
CAC
[ENA]
¡û
>W1710095776
CYPS01000008
Alphaproteobacteria
Ruegeria atlantica [CYPS]
107644
107570
-
Val
CAC
[ENA]
¡û
>W1710518491
FNEB01000001
Alphaproteobacteria
Lutimaribacter saemankumensis [FNEB]
307172
307246
+
Val
CAC
[ENA]
¡û
>W1710528893
FNNP01000001
Alphaproteobacteria
Ruegeria halocynthiae [FNNP]
873976
874050
+
Val
CAC
[ENA]
¡û
>W1710574581
FOYI01000015
Alphaproteobacteria
Poseidonocella sedimentorum [FOYI]
35821
35895
+
Val
CAC
[ENA]
¡û
>W1710578600
FPBS01000007
Alphaproteobacteria
Aliiroseovarius crassostreae [FPBS]
103679
103753
+
Val
CAC
[ENA]
¡û
>W1710587281
FQYJ01000001
Alphaproteobacteria
Ruegeria lacuscaerulensis ITI-1157 [FQYJ]
749125
749051
-
Val
CAC
[ENA]
¡û
>W1710599318
FTOQ01000002
Alphaproteobacteria
Roseivivax lentus [FTOQ]
571126
571200
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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