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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.439409 (42 seq.)
>W1711067415
LSEF01000089
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
86715
86789
+
Thr
GGT
[ENA]
¡û
>W1711505907
MKVY01000027
Alphaproteobacteria
Rhizobiales bacterium 65-9 [MKVY]
413771
413845
+
Thr
GGT
[ENA]
¡û
>C171131944
LT859959
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [LT859959]
6743609
6743683
+
Thr
GGT
-
¡û
>W131227275
AUFA01000009
Alphaproteobacteria
Bradyrhizobium sp. Cp5.3 [AUFA]
162613
162539
-
Thr
GGT
[ENA]
¡û
>C004098
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
6894920
6894994
+
Thr
GGT
[Ensembl]
¡û
>C013321
CP000390
Cyanobacteriota
Chelativorans sp. BNC1 [CP000390]
282215
282289
+
Thr
GGT
[Ensembl]
¡û
>WENV180371683
OBOI01008035
[OBOI] sediment metagenome; sediment
260
186
-
Thr
GGT
[ENA]
¢þ
>WENV181155349
OEID01115048
[OEID] soil metagenome; soil
82
156
+
Thr
GGT
[ENA]
¢þ
>WENV181172049
OEIV010465035
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
63
137
+
Thr
GGT
[ENA]
¢þ
>WENV181416824
OGCL01157748
[OGCL] hot springs metagenome; Hot spring water
149
75
-
Thr
GGT
[ENA]
¢þ
>W141149758
AWZU01000022
Alphaproteobacteria
Bradyrhizobium sp. ARR65 [AWZU]
30092
30166
+
Thr
GGT
[ENA]
¡û
>W141150979
AXAS01000001
Alphaproteobacteria
Bradyrhizobium sp. Ec3.3 [AXAS]
259296
259370
+
Thr
GGT
[ENA]
¡û
>W141244531
CAKO01000030
Alphaproteobacteria
Reyranella massiliensis 521 [CAKO]
80606
80680
+
Thr
GGT
[ENA]
¡û
>WENV182962912
OKWP01000001
[OKWP] human gut metagenome; stool
342011
341937
-
Thr
GGT
[ENA]
¢þ
>WENV183660338
ORJL010015997
[ORJL] groundwater metagenome; groundwater
10393
10467
+
Thr
GGT
[ENA]
¢þ
>WENV183661720
ORJL010131046
[ORJL] groundwater metagenome; groundwater
622
548
-
Thr
GGT
[ENA]
¢þ
>WENV183665741
ORJL010488156
[ORJL] groundwater metagenome; groundwater
2893
2819
-
Thr
GGT
[ENA]
¢þ
>WENV183671103
ORJL011026660
[ORJL] groundwater metagenome; groundwater
290
216
-
Thr
GGT
[ENA]
¢þ
>WENV170003257
AGTN01277054
[AGTN] bioreactor metagenome; poplar biomass
496
422
-
Thr
GGT
[ENA]
¢þ
>WENV170003981
AGTN01524232
[AGTN] bioreactor metagenome; poplar biomass
87
13
-
Thr
GGT
[ENA]
¢þ
>WENV170707545
LNAP01024827
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1476
1550
+
Thr
GGT
[ENA]
¢þ
>W1910698347
MEMN01000006
Alphaproteobacteria
Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 [MEMN]
33344
33270
-
Thr
GGT
[ENA]
¡û
>W1911139233
NOXS01000032
Alphaproteobacteria
Elstera cyanobacteriorum TH019 [NOXS]
487381
487455
+
Thr
GGT
[ENA]
¡û
>W1911219166
NRSI01000015
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
120609
120683
+
Thr
GGT
[ENA]
¡û
>W1911629601
PSRT01000054
Alphaproteobacteria
Bradyrhizobium genosp. SA-3 SA-3 Rp7b [PSRT]
8016
7942
-
Thr
GGT
[ENA]
¡û
>W1810787507
QRDT01000008
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
128679
128753
+
Thr
GGT
[ENA]
¡û
>W1810884404
QUMP01000008
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
128679
128753
+
Thr
GGT
[ENA]
¡û
>C10110755
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
5411552
5411626
+
Thr
GGT
[Ensembl]
¡û
>C11118761
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
5095059
5095133
+
Thr
GGT
[Ensembl]
¡û
>C161001632
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
300796
300870
+
Thr
GGT
[Ensembl]
¡û
>C161016827
CP007440
Alphaproteobacteria
Rhodoplanes sp. Z2-YC6860 [CP007440]
7305770
7305844
+
Thr
GGT
[Ensembl]
¡û
>C161048036
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
993764
993690
-
Thr
GGT
-
¡û
>C161062552
CP013949
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [CP013949]
897280
897206
-
Thr
GGT
[Ensembl]
¡û
>C161108114
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
393737
393663
-
Thr
GGT
[Ensembl]
¡û
>W121127087
CAFH01000172
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [CAFH]
2312
2238
-
Thr
GGT
[ENA]
¡û
>W121127137
CAFI01000297
Alphaproteobacteria
Bradyrhizobium sp. ORS 375 [CAFI]
75218
75144
-
Thr
GGT
[ENA]
¡û
>W121127169
CAFJ01000215
Alphaproteobacteria
Bradyrhizobium sp. STM 3809 [CAFJ]
4340
4266
-
Thr
GGT
[ENA]
¡û
>W1610550299
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
6163622
6163696
+
Thr
GGT
[ENA]
¡û
>W1610907985
LSEF01000089
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
86715
86789
+
Thr
GGT
[ENA]
¡û
>W1710510009
FMXQ01000005
Alphaproteobacteria
Bauldia litoralis [FMXQ]
375627
375701
+
Thr
GGT
[ENA]
¡û
>W1710548223
FODP01000006
Alphaproteobacteria
Rhodospirillales bacterium URHD0017 [FODP]
223233
223307
+
Thr
GGT
[ENA]
¡û
>W1710659025
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
6163622
6163696
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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