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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.439801 (80 seq.)
>W1711092547
LTEE01000060
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
136607
136534
-
Gly
CCC
[ENA]
¡û
>W1711096319
LTHQ01000033
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
127048
126975
-
Gly
CCC
[ENA]
¡û
>W1711102327
LTNQ01000025
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
181564
181637
+
Gly
CCC
[ENA]
¡û
>W1711102520
LTNU01000022
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
30656
30729
+
Gly
CCC
[ENA]
¡û
>W1711102598
LTNV01000060
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
25227
25154
-
Gly
CCC
[ENA]
¡û
>W1711103455
LTOS01000036
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
19152
19225
+
Gly
CCC
[ENA]
¡û
>W1711113411
LTYH01000007
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
22635
22562
-
Gly
CCC
[ENA]
¡û
>W1711114790
LTZP01000055
Actinomycetota
Corynebacterium sp. HMSC11E11 [LTZP]
9457
9384
-
Gly
CCC
[ENA]
¡û
>W131161743
AQXZ01000010
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 [AQXZ]
82746
82673
-
Gly
CCC
[ENA]
¡û
>W131162045
AQYG01000041
Actinomycetota
Jongsikchunia kroppenstedtii DSM 45133 [AQYG]
32009
32082
+
Gly
CCC
[ENA]
¡û
>W1711187084
LWOT01000069
Actinomycetota
Corynebacterium sp. HMSC28B08 [LWOT]
23271
23198
-
Gly
CCC
[ENA]
¡û
>W1711187875
LWPW01000007
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
7928
7857
-
Gly
CCC
[ENA]
¡û
>W1711724011
MTPT01000015
Actinomycetota
Corynebacterium amycolatum [MTPT]
31770
31697
-
Gly
CCC
[ENA]
¡û
>PL171001816
LN868939
Actinobacteria
Nocardia farcinica NCTC11134 plasmid:2
980856
980783
-
Gly
CCC
[ENA]
¡û
>WENV180731683
ODGW01006480
[ODGW] human metagenome; G_DNA_Supragingival plaque
868
941
+
Gly
CCC
[ENA]
¢þ
>WENV180781514
ODIP01000432
[ODIP] human metagenome; G_DNA_Supragingival plaque
11472
11399
-
Gly
CCC
[ENA]
¢þ
>WENV180822987
ODJW01001558
[ODJW] human metagenome; G_DNA_Supragingival plaque
5428
5357
-
Gly
CCC
[ENA]
¢þ
>WENV180832272
ODKC01000931
[ODKC] human metagenome; G_DNA_Supragingival plaque
14032
14103
+
Gly
CCC
[ENA]
¢þ
>WENV180832429
ODKC01001539
[ODKC] human metagenome; G_DNA_Supragingival plaque
7079
7008
-
Gly
CCC
[ENA]
¢þ
>WENV180835210
ODKE01001190
[ODKE] human metagenome; G_DNA_Supragingival plaque
11755
11682
-
Gly
CCC
[ENA]
¢þ
>WENV180888066
ODMN01000036
[ODMN] human metagenome; G_DNA_Supragingival plaque
9367
9440
+
Gly
CCC
[ENA]
¢þ
>WENV180980621
ODVE01000806
[ODVE] human metagenome; G_DNA_Supragingival plaque
8336
8409
+
Gly
CCC
[ENA]
¢þ
>WENV181007491
ODWE01000136
[ODWE] human metagenome; G_DNA_Supragingival plaque
55225
55296
+
Gly
CCC
[ENA]
¢þ
>WENV181008703
ODWE01011340
[ODWE] human metagenome; G_DNA_Supragingival plaque
3141
3214
+
Gly
CCC
[ENA]
¢þ
>WENV181049345
ODYD01000039
[ODYD] human metagenome; G_DNA_Supragingival plaque
70300
70373
+
Gly
CCC
[ENA]
¢þ
>WENV181050146
ODYD01007412
[ODYD] human metagenome; G_DNA_Supragingival plaque
2866
2793
-
Gly
CCC
[ENA]
¢þ
>WENV181159983
OEIK01001101
[OEIK] human metagenome; G_DNA_Supragingival plaque
11833
11760
-
Gly
CCC
[ENA]
¢þ
>WENV182628995
OJKR01000839
[OJKR] metagenome; surface
929
1000
+
Gly
CCC
[ENA]
¢þ
>WENV182640356
OJLB01004270
[OJLB] metagenome; surface
1966
1895
-
Gly
CCC
[ENA]
¢þ
>WENV182643305
OJLU01000475
[OJLU] metagenome; surface
752
823
+
Gly
CCC
[ENA]
¢þ
>WENV182671726
OJNM01001706
[OJNM] metagenome; surface
1777
1706
-
Gly
CCC
[ENA]
¢þ
>WENV182837574
OKGJ01000585
[OKGJ] human gut metagenome; human gut
677
750
+
Gly
CCC
[ENA]
¢þ
>WENV183510239
OMHN01000115
[OMHN] human oral metagenome; human oral
333
262
-
Gly
CCC
[ENA]
¢þ
>C181057488
CP022088
Actinomycetota
Nocardia brasiliensis FDAARGOS_352 [CP022088]
6922873
6922802
-
Gly
CCC
-
¡û
>C181139073
CP026746
Actinomycetota
Nocardia cyriacigeorgica MDA3349 [CP026746]
2007604
2007675
+
Gly
CCC
-
¡û
>C191065458
CP029710
Actinomycetota
Nocardia sp. CS682 [CP029710]
4261569
4261640
+
Gly
CCC
-
¡û
>C191094602
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
2238264
2238191
-
Gly
CCC
-
¡û
>C191130423
CP034753
Actinomycetota
Agromyces sp. LHK192 [CP034753]
3987487
3987559
+
Gly
CCC
-
¡û
>C191219099
LR215973
Actinomycetota
Nocardia cyriacigeorgica 3012STDY6756504 [LR215973]
4433667
4433596
-
Gly
CCC
-
¡û
>W141759292
JNZF01000009
Actinomycetota
Nocardia carnea carneus [JNZF]
259541
259614
+
Gly
CCC
[ENA]
¡û
>W1911279012
NTGA01000015
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
73808
73879
+
Gly
CCC
[ENA]
¡û
>W1911422410
NXEG01000003
Actinomycetota
Nocardia farcinica CNM20091955 [NXEG]
1400
1327
-
Gly
CCC
[ENA]
¡û
>W1911422545
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
2926570
2926498
-
Gly
CCC
[ENA]
¡û
>W1911532645
OIFR01000001
Actinomycetota
Nocardia suismassiliense S-137 [OIFR]
37037
37108
+
Gly
CCC
[ENA]
¡û
>W1911621758
PQNK01000007
Actinomycetota
Corynebacterium bovis F6900 [PQNK]
88674
88601
-
Gly
CCC
[ENA]
¡û
>W1911622405
PQNX01000005
Actinomycetota
Corynebacterium bovis 4826 [PQNX]
107890
107817
-
Gly
CCC
[ENA]
¡û
>W1911814634
QZFU01000016
Actinomycetota
Nocardia panacis YIM PH 21724 [QZFU]
616548
616621
+
Gly
CCC
[ENA]
¡û
>W1810282651
PSZF01000007
Actinomycetota
Nocardia cyriacigeorgica MDA3732 [PSZF]
161661
161732
+
Gly
CCC
[ENA]
¡û
>W1810532490
QCYJ01000005
Actinomycetota
Nocardia aurea SYSU K10002 [QCYJ]
652203
652131
-
Gly
CCC
[ENA]
¡û
>W1810608600
QGTL01000004
Actinomycetota
Nocardia neocaledoniensis DSM 44717 [QGTL]
90934
91005
+
Gly
CCC
[ENA]
¡û
>W1810623594
QHCV01000077
Actinomycetota
Corynebacterium heidelbergense 647 [QHCV]
9992
10065
+
Gly
CCC
[ENA]
¡û
>W1810720298
QNRE01000010
Actinomycetota
Nocardia puris DSM 44599 [QNRE]
238139
238066
-
Gly
CCC
[ENA]
¡û
>W1810722014
QNTT01000033
Actinomycetota
Dietzia maris SST1 [QNTT]
32085
32013
-
Gly
CCC
[ENA]
¡û
>C151013244
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
2565930
2566003
+
Gly
CCC
-
¡û
>C151084396
CP011542
Actinomycetota
Corynebacterium mustelae DSM 45274 [CP011542]
3072661
3072734
+
Gly
CCC
[Ensembl]
¡û
>W1511221566
JNFP01000016
Actinomycetota
Nocardia vulneris W9851 [JNFP]
690
619
-
Gly
CCC
[ENA]
¡û
>W1511351366
JRNE01000053
Actinomycetota
Corynebacterium freneyi DNF00450 [JRNE]
121175
121248
+
Gly
CCC
[ENA]
¡û
>W1511457807
JVIP01000035
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
1531
1458
-
Gly
CCC
[ENA]
¡û
>W1511464330
JVPT01000078
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
125538
125467
-
Gly
CCC
[ENA]
¡û
>W11178765
AGFF01000014
Actinomycetota
Dietzia alimentaria 72 [AGFF]
3606
3535
-
Gly
CCC
[ENA]
¡û
>W121125003
BAFR01000212
Actinomycetota
Nocardia araoensis NBRC 100135 [BAFR]
17688
17761
+
Gly
CCC
[ENA]
¡û
>W121125053
BAFS01000284
Actinomycetota
Nocardia asiatica NBRC 100129 [BAFS]
4083
4156
+
Gly
CCC
[ENA]
¡û
>W121125361
BAFY01000242
Actinomycetota
Nocardia cyriacigeorgica NBRC 100375 [BAFY]
15789
15716
-
Gly
CCC
[ENA]
¡û
>W121125408
BAFZ01000119
Actinomycetota
Nocardia exalbida NBRC 100660 [BAFZ]
257078
257151
+
Gly
CCC
[ENA]
¡û
>W121125458
BAGA01000139
Actinomycetota
Nocardia higoensis NBRC 100133 [BAGA]
73792
73865
+
Gly
CCC
[ENA]
¡û
>W121125827
BAGH01000400
Actinomycetota
Nocardia tenerifensis NBRC 101015 [BAGH]
45902
45975
+
Gly
CCC
[ENA]
¡û
>W1610078472
BDAX01000021
Actinomycetota
Nocardia alba NBRC 108234 [BDAX]
218039
217966
-
Gly
CCC
[ENA]
¡û
>W1610078515
BDAY01000030
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
107358
107285
-
Gly
CCC
[ENA]
¡û
>W1610078936
BDBG01000019
Actinomycetota
Nocardia salmonicida NBRC 100378 [BDBG]
18437
18510
+
Gly
CCC
[ENA]
¡û
>W1610079367
BDBP01000020
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
92643
92570
-
Gly
CCC
[ENA]
¡û
>W1610079565
BDBT01000001
Actinomycetota
Nocardia shimofusensis NBRC 100134 [BDBT]
238208
238281
+
Gly
CCC
[ENA]
¡û
>W1610080037
BDCB01000048
Actinomycetota
Nocardia salmonicida NBRC 100376 [BDCB]
113711
113638
-
Gly
CCC
[ENA]
¡û
>W1610080246
BDCF01000016
Actinomycetota
Nocardia xishanensis NBRC 101358 [BDCF]
147259
147186
-
Gly
CCC
[ENA]
¡û
>W1710077031
BDAX01000021
Actinomycetota
Nocardia alba NBRC 108234 [BDAX]
218039
217966
-
Gly
CCC
[ENA]
¡û
>W1710077074
BDAY01000030
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
107358
107285
-
Gly
CCC
[ENA]
¡û
>W1710077495
BDBG01000019
Actinomycetota
Nocardia salmonicida NBRC 100378 [BDBG]
18437
18510
+
Gly
CCC
[ENA]
¡û
>W1710077926
BDBP01000020
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
92643
92570
-
Gly
CCC
[ENA]
¡û
>W1710078124
BDBT01000001
Actinomycetota
Nocardia shimofusensis NBRC 100134 [BDBT]
238208
238281
+
Gly
CCC
[ENA]
¡û
>W1710078596
BDCB01000048
Actinomycetota
Nocardia salmonicida NBRC 100376 [BDCB]
113711
113638
-
Gly
CCC
[ENA]
¡û
>W1710078805
BDCF01000016
Actinomycetota
Nocardia xishanensis NBRC 101358 [BDCF]
147259
147186
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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