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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.441615 (104 seq.)
>W1711308510
MAPZ01000035
Bacillota
Clostridium paraputrificum [MAPZ]
85254
85180
-
Asn
GTT
[ENA]
¡û
>W131232279
AUJC01000013
Bacillota
Clostridium paraputrificum AGR2156 [AUJC]
43424
43350
-
Asn
GTT
[ENA]
¡û
>W1711774222
MVIY01000026
Bacillota
Clostridium botulinum D/C [MVIY]
49817
49891
+
Asn
GTT
[ENA]
¡û
>W1711774257
MVIY01000095
Bacillota
Clostridium botulinum D/C [MVIY]
3749
3675
-
Asn
GTT
[ENA]
¡û
>W1711774347
MVJA01000060
Bacillota
Clostridium botulinum D/C [MVJA]
3707
3633
-
Asn
GTT
[ENA]
¡û
>W1711774384
MVJB01000028
Bacillota
Clostridium botulinum D/C [MVJB]
49813
49887
+
Asn
GTT
[ENA]
¡û
>W1711774416
MVJB01000082
Bacillota
Clostridium botulinum D/C [MVJB]
27
101
+
Asn
GTT
[ENA]
¡û
>W1711774436
MVJC01000012
Bacillota
Clostridium botulinum D/C [MVJC]
3756
3682
-
Asn
GTT
[ENA]
¡û
>C006229
CP000382
Bacillota
Clostridium novyi NT [CP000382]
166178
166252
+
Asn
GTT
[Ensembl]
¡û
>WENV180177032
OAWD01023210
[OAWD] human gut metagenome; faeces
235
161
-
Asn
GTT
[ENA]
¢þ
>WENV180439818
OBWT01021669
[OBWT] human gut metagenome; faeces
95
169
+
Asn
GTT
[ENA]
¢þ
>WENV180486243
OBZL01000078
[OBZL] human gut metagenome; faeces
63
137
+
Asn
GTT
[ENA]
¢þ
>WENV180941372
ODTZ01004366
[ODTZ] human metagenome; G_DNA_Stool
3711
3637
-
Asn
GTT
[ENA]
¢þ
>W08001253
ABDQ01000008
Bacillota
Clostridium botulinum C str. Eklund [ABDQ]
114763
114837
+
Asn
GTT
[ENA]
¡û
>WENV181225950
OFDJ01002885
[OFDJ] metagenome; Human gut stool
323
397
+
Asn
GTT
[ENA]
¢þ
>WENV181463462
OGEO01003691
[OGEO] metagenome; Human gut stool
3747
3673
-
Asn
GTT
[ENA]
¢þ
>WENV181740659
OGQJ01013359
[OGQJ] human gut metagenome; faeces
1086
1012
-
Asn
GTT
[ENA]
¢þ
>WENV181798759
OGRX01000121
[OGRX] human gut metagenome; fecal sample 2 from infant 8
329
403
+
Asn
GTT
[ENA]
¢þ
>WENV181801893
OGSC01000271
[OGSC] human gut metagenome; fecal sample 8 from infant 5
36404
36330
-
Asn
GTT
[ENA]
¢þ
>WENV181804326
OGSF01000087
[OGSF] human gut metagenome; fecal sample 3 from infant 5
51594
51520
-
Asn
GTT
[ENA]
¢þ
>WENV181805315
OGSI01000063
[OGSI] human gut metagenome; fecal sample 4 from infant 8
77860
77786
-
Asn
GTT
[ENA]
¢þ
>WENV181806145
OGSK01000086
[OGSK] human gut metagenome; fecal sample 2 from infant 5
51599
51525
-
Asn
GTT
[ENA]
¢þ
>WENV181807335
OGSO01000131
[OGSO] human gut metagenome; fecal sample 3 from infant 6
106
180
+
Asn
GTT
[ENA]
¢þ
>WENV181809483
OGST01000292
[OGST] human gut metagenome; fecal sample 7 from infant 6
323
397
+
Asn
GTT
[ENA]
¢þ
>WENV181809979
OGSU01000190
[OGSU] human gut metagenome; fecal sample 7 from infant 5
106
180
+
Asn
GTT
[ENA]
¢þ
>WENV181814736
OGTH01000185
[OGTH] human gut metagenome; fecal sample 4 from infant 6
41177
41103
-
Asn
GTT
[ENA]
¢þ
>WENV181826124
OGUL01005792
[OGUL] human gut metagenome; faeces
2261
2335
+
Asn
GTT
[ENA]
¢þ
>WENV181834559
OGUR01002403
[OGUR] metagenome; Human gut stool
915
841
-
Asn
GTT
[ENA]
¢þ
>WENV182132987
OHKF01006164
[OHKF] human gut metagenome; feces
2665
2591
-
Asn
GTT
[ENA]
¢þ
>WENV182407515
OIFD01000066
[OIFD] human gut metagenome; stool
103496
103422
-
Asn
GTT
[ENA]
¢þ
>WENV182409733
OIFJ01000154
[OIFJ] human gut metagenome; stool
117
191
+
Asn
GTT
[ENA]
¢þ
>WENV182855819
OKNE01002632
[OKNE] human gut metagenome; human gut
877
803
-
Asn
GTT
[ENA]
¢þ
>WENV182864158
OKPZ01000658
[OKPZ] human gut metagenome; human gut
2308
2382
+
Asn
GTT
[ENA]
¢þ
>WENV182865057
OKQH01001933
[OKQH] human gut metagenome; human gut
842
768
-
Asn
GTT
[ENA]
¢þ
>WENV182946111
OKVK01006473
[OKVK] human gut metagenome; human gut
2438
2512
+
Asn
GTT
[ENA]
¢þ
>WENV182954804
OKWB01000018
[OKWB] human gut metagenome; stool
223461
223387
-
Asn
GTT
[ENA]
¢þ
>WENV182958996
OKWI01000126
[OKWI] human gut metagenome; stool
39425
39351
-
Asn
GTT
[ENA]
¢þ
>WENV182961811
OKWL01000394
[OKWL] human gut metagenome; stool
19043
18969
-
Asn
GTT
[ENA]
¢þ
>WENV182962304
OKWN01000180
[OKWN] human gut metagenome; stool
117
191
+
Asn
GTT
[ENA]
¢þ
>WENV182962713
OKWO01000042
[OKWO] human gut metagenome; stool
117
191
+
Asn
GTT
[ENA]
¢þ
>WENV182967166
OKWZ01000052
[OKWZ] human gut metagenome; stool
113307
113233
-
Asn
GTT
[ENA]
¢þ
>WENV183112645
OLNP01001333
[OLNP] human gut metagenome; faeces
17405
17479
+
Asn
GTT
[ENA]
¢þ
>WENV183112647
OLNP01001333
[OLNP] human gut metagenome; faeces
17594
17668
+
Asn
GTT
[ENA]
¢þ
>WENV183607772
OODO01060826
[OODO] human gut metagenome; human gut
26
100
+
Asn
GTT
[ENA]
¢þ
>W141427391
JENK01000010
Bacillota
Clostridium novyi A str. NCTC 538 [JENK]
3850
3776
-
Asn
GTT
[ENA]
¡û
>W141427566
JENM01000014
Bacillota
Clostridium novyi A str. BKT29909 [JENM]
50903
50977
+
Asn
GTT
[ENA]
¡û
>W141427680
JENO01000002
Bacillota
Clostridium botulinum C/D str. It1 [JENO]
3831
3757
-
Asn
GTT
[ENA]
¡û
>W141427750
JENP01000001
Bacillota
Clostridium botulinum C/D str. BKT12695 [JENP]
150340
150414
+
Asn
GTT
[ENA]
¡û
>W141427887
JENR01000017
Bacillota
Clostridium botulinum D str. 16868 [JENR]
3901
3827
-
Asn
GTT
[ENA]
¡û
>W141427933
JENR01000048
Bacillota
Clostridium botulinum D str. 16868 [JENR]
263
337
+
Asn
GTT
[ENA]
¡û
>W141427977
JENS01000051
Bacillota
Clostridium botulinum C/D str. BKT75002 [JENS]
2826
2752
-
Asn
GTT
[ENA]
¡û
>W141428033
JENS01000103
Bacillota
Clostridium botulinum C/D str. BKT75002 [JENS]
63428
63502
+
Asn
GTT
[ENA]
¡û
>W141428098
JENT01000113
Bacillota
Clostridium botulinum C/D str. BKT2873 [JENT]
63551
63625
+
Asn
GTT
[ENA]
¡û
>W141428124
JENT01000136
Bacillota
Clostridium botulinum C/D str. BKT2873 [JENT]
521
595
+
Asn
GTT
[ENA]
¡û
>W141428147
JENU01000015
Bacillota
Clostridium sp. K25 [JENU]
4726
4652
-
Asn
GTT
[ENA]
¡û
>W141428214
JENU01000077
Bacillota
Clostridium sp. K25 [JENU]
276
202
-
Asn
GTT
[ENA]
¡û
>W141428281
JENV01000029
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
4190
4116
-
Asn
GTT
[ENA]
¡û
>W141428284
JENV01000030
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
42718
42644
-
Asn
GTT
[ENA]
¡û
>W141428319
JENW01000007
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
75919
75845
-
Asn
GTT
[ENA]
¡û
>W141428335
JENW01000034
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
58762
58836
+
Asn
GTT
[ENA]
¡û
>W141428428
JENX01000042
Bacillota
Clostridium haemolyticum NCTC 9693 [JENX]
262
336
+
Asn
GTT
[ENA]
¡û
>W141428473
JENX01000110
Bacillota
Clostridium haemolyticum NCTC 9693 [JENX]
73074
73148
+
Asn
GTT
[ENA]
¡û
>C191012375
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
192310
192384
+
Asn
GTT
-
¡û
>C191012376
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
192413
192487
+
Asn
GTT
-
¡û
>C191012377
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
192515
192589
+
Asn
GTT
-
¡û
>C191012432
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
2487346
2487272
-
Asn
GTT
-
¡û
>C191037304
CP025746
Bacillota
Clostridium manihotivorum CT4 [CP025746]
1385433
1385507
+
Asn
GTT
-
¡û
>C191063965
CP029458
Bacillota
Clostridium novyi 150557 [CP029458]
688975
688901
-
Asn
GTT
-
¡û
>C191063971
CP029458
Bacillota
Clostridium novyi 150557 [CP029458]
674399
674325
-
Asn
GTT
-
¡û
>W09134509
ACSJ01000006
Bacillota
Clostridium botulinum D str. 1873 [ACSJ]
4554
4480
-
Asn
GTT
[ENA]
¡û
>W09134514
ACSJ01000007
Bacillota
Clostridium botulinum D str. 1873 [ACSJ]
1448747
1448673
-
Asn
GTT
[ENA]
¡û
>W1910483270
FXLO01000006
Bacillota
Clostridium massiliodielmoense MT26 [FXLO]
4158
4084
-
Asn
GTT
[ENA]
¡û
>W1911493623
OBIP01000006
Bacillota
Clostridium paraputrificum LH141 [OBIP]
194
268
+
Asn
GTT
[ENA]
¡û
>W1911493730
OBIQ01000041
Bacillota
Clostridium paraputrificum LH058 [OBIQ]
187
261
+
Asn
GTT
[ENA]
¡û
>W1911493901
OBJN01000013
Bacillota
Clostridium paraputrificum LH025 [OBJN]
59752
59678
-
Asn
GTT
[ENA]
¡û
>W1810604883
QGMT01000025
Bacillota
Clostridium paraputrificum Gcol.A11 [QGMT]
187
261
+
Asn
GTT
[ENA]
¡û
>C11101096
AP012202
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Japan [AP012202]
305856
305930
+
Asn
GTT
[Ensembl]
¡û
>C11101097
AP012202
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Japan [AP012202]
310778
310852
+
Asn
GTT
[Ensembl]
¡û
>C11101134
AP012209
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Yit [AP012209]
305164
305238
+
Asn
GTT
[Ensembl]
¡û
>C11104897
CP002410
Bacillota
Clostridium botulinum BKT015925 [CP002410]
176258
176332
+
Asn
GTT
[Ensembl]
¡û
>C11104899
CP002410
Bacillota
Clostridium botulinum BKT015925 [CP002410]
185095
185169
+
Asn
GTT
[Ensembl]
¡û
>W1510882101
JDRX01000003
Bacillota
Clostridium novyi A str. 4570 [JDRX]
4004
3930
-
Asn
GTT
[ENA]
¡û
>W1510909005
JENJ01000014
Bacillota
Clostridium novyi A str. 4552 [JENJ]
4092
4018
-
Asn
GTT
[ENA]
¡û
>W1511445739
JUWA01000046
Bacillota
Clostridium botulinum 713_CBOT [JUWA]
39628
39554
-
Asn
GTT
[ENA]
¡û
>W11146135
AESB01000012
Bacillota
Clostridium botulinum BKT028387 [AESB]
36715
36789
+
Asn
GTT
[ENA]
¡û
>W11146182
AESB01000214
Bacillota
Clostridium botulinum BKT028387 [AESB]
237
311
+
Asn
GTT
[ENA]
¡û
>W11146217
AESC01000061
Bacillota
Clostridium botulinum V891 [AESC]
13376
13450
+
Asn
GTT
[ENA]
¡û
>W11146233
AESC01000135
Bacillota
Clostridium botulinum V891 [AESC]
238
312
+
Asn
GTT
[ENA]
¡û
>W1511687847
LFVU01000008
Bacillota
Clostridium cylindrosporum DSM 605 [LFVU]
36330
36256
-
Asn
GTT
[ENA]
¡û
>W1511687855
LFVU01000014
Bacillota
Clostridium cylindrosporum DSM 605 [LFVU]
66
140
+
Asn
GTT
[ENA]
¡û
>W1511687871
LFVU01000024
Bacillota
Clostridium cylindrosporum DSM 605 [LFVU]
653
579
-
Asn
GTT
[ENA]
¡û
>W1511687877
LFVU01000027
Bacillota
Clostridium cylindrosporum DSM 605 [LFVU]
275
349
+
Asn
GTT
[ENA]
¡û
>W1511707681
LGVP01000024
Bacillota
Clostridium botulinum 29401-CD [LGVP]
37058
37132
+
Asn
GTT
[ENA]
¡û
>W121021243
AGVP01000006
Bacillota
Candidatus Arthromitus sp. SFB-mouse-SU [AGVP]
501
575
+
Asn
GTT
[ENA]
¡û
>W1610104329
CZBQ01000005
Bacillota
Clostridium paraputrificum [CZBQ]
234420
234346
-
Asn
GTT
[ENA]
¡û
>W1611056169
MAPZ01000035
Bacillota
Clostridium paraputrificum [MAPZ]
85254
85180
-
Asn
GTT
[ENA]
¡û
>W1710107033
CZBQ01000005
Bacillota
Clostridium paraputrificum [CZBQ]
234420
234346
-
Asn
GTT
[ENA]
¡û
>W1710587154
FQXU01000008
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
240243
240169
-
Asn
GTT
[ENA]
¡û
>W1710588710
FQZO01000007
Bacillota
Clostridium amylolyticum [FQZO]
22608
22534
-
Asn
GTT
[ENA]
¡û
>W1710588712
FQZO01000008
Bacillota
Clostridium amylolyticum [FQZO]
167804
167730
-
Asn
GTT
[ENA]
¡û
>W1710588715
FQZO01000009
Bacillota
Clostridium amylolyticum [FQZO]
133827
133753
-
Asn
GTT
[ENA]
¡û
>W1710754986
LHYV01000044
Bacillota
Clostridium botulinum [LHYV]
27371
27445
+
Asn
GTT
[ENA]
¡û
>W1710755037
LHYX01000031
Bacillota
Clostridium botulinum [LHYX]
74054
74128
+
Asn
GTT
[ENA]
¡û
>W1710755041
LHYX01000053
Bacillota
Clostridium botulinum [LHYX]
36114
36040
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK