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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.441920 (100 seq.)
>W1710892604
LNDX01000006
Bacteroidota
Flavobacteriaceae bacterium Ga0077528 [LNDX]
148588
148514
-
Glu
TTC
[ENA]
¡û
>W1710892605
LNDX01000006
Bacteroidota
Flavobacteriaceae bacterium Ga0077528 [LNDX]
148472
148398
-
Glu
TTC
[ENA]
¡û
>W1710905389
LNNF01000191
Bacteroidota
Flavobacterium psychrophilum [LNNF]
1368
1296
-
Glu
TTC
[ENA]
¡û
>W1710905390
LNNF01000191
Bacteroidota
Flavobacterium psychrophilum [LNNF]
1265
1191
-
Glu
TTC
[ENA]
¡û
>W1710914545
LNTP01000135
Bacteroidota
Flavobacterium psychrophilum [LNTP]
2896
2824
-
Glu
TTC
[ENA]
¡û
>W1710914546
LNTP01000135
Bacteroidota
Flavobacterium psychrophilum [LNTP]
2793
2719
-
Glu
TTC
[ENA]
¡û
>W1710914585
LNTQ01000124
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
49798
49870
+
Glu
TTC
[ENA]
¡û
>W1710914586
LNTQ01000124
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
49901
49975
+
Glu
TTC
[ENA]
¡û
>W1711053984
LRTL01000003
Bacteroidota
Flavobacterium psychrophilum [LRTL]
115816
115888
+
Glu
TTC
[ENA]
¡û
>W1711053985
LRTL01000003
Bacteroidota
Flavobacterium psychrophilum [LRTL]
115919
115993
+
Glu
TTC
[ENA]
¡û
>W1711431497
MIJV01000009
Bacteroidota
Flavobacterium psychrophilum [MIJV]
3796
3724
-
Glu
TTC
[ENA]
¡û
>W1711431498
MIJV01000009
Bacteroidota
Flavobacterium psychrophilum [MIJV]
3693
3619
-
Glu
TTC
[ENA]
¡û
>W1711431550
MIJW01000044
Bacteroidota
Flavobacterium psychrophilum [MIJW]
970
898
-
Glu
TTC
[ENA]
¡û
>W1711431551
MIJW01000044
Bacteroidota
Flavobacterium psychrophilum [MIJW]
867
793
-
Glu
TTC
[ENA]
¡û
>W1711712450
MTBY01000014
Bacteroidota
Flavobacterium psychrophilum [MTBY]
105668
105740
+
Glu
TTC
[ENA]
¡û
>W1711712451
MTBY01000014
Bacteroidota
Flavobacterium psychrophilum [MTBY]
105771
105845
+
Glu
TTC
[ENA]
¡û
>W1711712485
MTBZ01000010
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
127557
127629
+
Glu
TTC
[ENA]
¡û
>W1711712486
MTBZ01000010
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
127660
127734
+
Glu
TTC
[ENA]
¡û
>W1711712562
MTCB01000003
Bacteroidota
Flavobacterium psychrophilum [MTCB]
201973
202045
+
Glu
TTC
[ENA]
¡û
>W1711712563
MTCB01000003
Bacteroidota
Flavobacterium psychrophilum [MTCB]
202076
202150
+
Glu
TTC
[ENA]
¡û
>W1711712644
MTCD01000096
Bacteroidota
Flavobacterium psychrophilum [MTCD]
1424
1352
-
Glu
TTC
[ENA]
¡û
>W1711712645
MTCD01000096
Bacteroidota
Flavobacterium psychrophilum [MTCD]
1321
1247
-
Glu
TTC
[ENA]
¡û
>WENV183621040
OOFT01003198
[OOFT] marine metagenome; sea ice
1650
1722
+
Glu
TTC
[ENA]
¢þ
>WENV183621041
OOFT01003198
[OOFT] marine metagenome; sea ice
1767
1839
+
Glu
TTC
[ENA]
¢þ
>WENV170554374
CXWK01065420
[CXWK] wastewater metagenome; activated sludge
743
815
+
Glu
TTC
[ENA]
¢þ
>W1910183388
BJNR01000015
Bacteroidota
Flavobacterium aquatile NBRC 15052 [BJNR]
74656
74584
-
Glu
TTC
[ENA]
¡û
>W1910183389
BJNR01000015
Bacteroidota
Flavobacterium aquatile NBRC 15052 [BJNR]
74540
74468
-
Glu
TTC
[ENA]
¡û
>W1910184583
BJSV01000020
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
6033
6105
+
Glu
TTC
[ENA]
¡û
>W1910184584
BJSV01000020
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
6136
6208
+
Glu
TTC
[ENA]
¡û
>W1910184899
BJTD01000089
Bacteroidota
Flavobacterium psychrophilum KKAC-1706 [BJTD]
1082
1010
-
Glu
TTC
[ENA]
¡û
>W1910184900
BJTD01000089
Bacteroidota
Flavobacterium psychrophilum KKAC-1706 [BJTD]
979
907
-
Glu
TTC
[ENA]
¡û
>W1910184938
BJTE01000104
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
1274
1202
-
Glu
TTC
[ENA]
¡û
>W1910184939
BJTE01000104
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
1171
1099
-
Glu
TTC
[ENA]
¡û
>W1910184975
BJTF01000092
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
1268
1196
-
Glu
TTC
[ENA]
¡û
>W1910184976
BJTF01000092
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
1165
1093
-
Glu
TTC
[ENA]
¡û
>W1910503031
FYBZ01000062
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
6719
6791
+
Glu
TTC
[ENA]
¡û
>W1910503032
FYBZ01000062
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
6822
6894
+
Glu
TTC
[ENA]
¡û
>W1910503060
FYCA01000075
Bacteroidota
Flavobacterium psychrophilum FI055 [FYCA]
2669
2741
+
Glu
TTC
[ENA]
¡û
>W1910503061
FYCA01000075
Bacteroidota
Flavobacterium psychrophilum FI055 [FYCA]
2772
2844
+
Glu
TTC
[ENA]
¡û
>W1910503097
FYCB01000064
Bacteroidota
Flavobacterium psychrophilum DK150 [FYCB]
18764
18836
+
Glu
TTC
[ENA]
¡û
>W1910503098
FYCB01000064
Bacteroidota
Flavobacterium psychrophilum DK150 [FYCB]
18867
18939
+
Glu
TTC
[ENA]
¡û
>W1910503109
FYCC01000020
Bacteroidota
Flavobacterium psychrophilum FI056 [FYCC]
953
881
-
Glu
TTC
[ENA]
¡û
>W1910503110
FYCC01000020
Bacteroidota
Flavobacterium psychrophilum FI056 [FYCC]
850
778
-
Glu
TTC
[ENA]
¡û
>W1910503188
FYCE01000084
Bacteroidota
Flavobacterium psychrophilum FI146 [FYCE]
2668
2740
+
Glu
TTC
[ENA]
¡û
>W1910503189
FYCE01000084
Bacteroidota
Flavobacterium psychrophilum FI146 [FYCE]
2771
2843
+
Glu
TTC
[ENA]
¡û
>W1910503218
FYCF01000030
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
952
880
-
Glu
TTC
[ENA]
¡û
>W1910503219
FYCF01000030
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
849
777
-
Glu
TTC
[ENA]
¡û
>W1910503233
FYCG01000002
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
768
696
-
Glu
TTC
[ENA]
¡û
>W1910503234
FYCG01000002
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
665
593
-
Glu
TTC
[ENA]
¡û
>W1910503298
FYCH01000061
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
6688
6760
+
Glu
TTC
[ENA]
¡û
>W1910503299
FYCH01000061
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
6791
6863
+
Glu
TTC
[ENA]
¡û
>W1910503315
FYCI01000023
Bacteroidota
Flavobacterium psychrophilum DK095 [FYCI]
815
743
-
Glu
TTC
[ENA]
¡û
>W1910503316
FYCI01000023
Bacteroidota
Flavobacterium psychrophilum DK095 [FYCI]
712
640
-
Glu
TTC
[ENA]
¡û
>W1910503570
FYCO01000029
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
1219
1147
-
Glu
TTC
[ENA]
¡û
>W1910503571
FYCO01000029
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
1116
1044
-
Glu
TTC
[ENA]
¡û
>W1910503675
FYCS01000037
Bacteroidota
Flavobacterium psychrophilum IT09 [FYCS]
6688
6760
+
Glu
TTC
[ENA]
¡û
>W1910503676
FYCS01000037
Bacteroidota
Flavobacterium psychrophilum IT09 [FYCS]
6791
6863
+
Glu
TTC
[ENA]
¡û
>W1910503795
FYCW01000038
Bacteroidota
Flavobacterium psychrophilum LM-01-Fp [FYCW]
105472
105544
+
Glu
TTC
[ENA]
¡û
>W1910503796
FYCW01000038
Bacteroidota
Flavobacterium psychrophilum LM-01-Fp [FYCW]
105575
105647
+
Glu
TTC
[ENA]
¡û
>W1910503876
FYCY01000063
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
1277
1205
-
Glu
TTC
[ENA]
¡û
>W1910503877
FYCY01000063
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
1174
1102
-
Glu
TTC
[ENA]
¡û
>W1910503956
FYDB01000010
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
64811
64883
+
Glu
TTC
[ENA]
¡û
>W1910503957
FYDB01000010
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
64914
64986
+
Glu
TTC
[ENA]
¡û
>W1910504015
FYDC01000033
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
6688
6760
+
Glu
TTC
[ENA]
¡û
>W1910504016
FYDC01000033
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
6791
6863
+
Glu
TTC
[ENA]
¡û
>W1910808795
MUGQ01000004
Bacteroidota
Flavobacterium aquatile ATCC 11947 [MUGQ]
169974
169902
-
Glu
TTC
[ENA]
¡û
>W1910808796
MUGQ01000004
Bacteroidota
Flavobacterium aquatile ATCC 11947 [MUGQ]
169858
169786
-
Glu
TTC
[ENA]
¡û
>W1910809518
MUHE01000051
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
5971
6043
+
Glu
TTC
[ENA]
¡û
>W1910809519
MUHE01000051
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
6074
6146
+
Glu
TTC
[ENA]
¡û
>C151018545
CP007207
Bacteroidota
Flavobacterium psychrophilum FPG3 [CP007207]
1056091
1056163
+
Glu
TTC
[Ensembl]
¡û
>C151018546
CP007207
Bacteroidota
Flavobacterium psychrophilum FPG3 [CP007207]
1056194
1056268
+
Glu
TTC
[Ensembl]
¡û
>C151030353
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
2063699
2063627
-
Glu
TTC
[Ensembl]
¡û
>C151030354
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
2063596
2063522
-
Glu
TTC
[Ensembl]
¡û
>C151038980
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
1452560
1452488
-
Glu
TTC
[Ensembl]
¡û
>C151038981
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
1452457
1452383
-
Glu
TTC
[Ensembl]
¡û
>C151039545
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
1436988
1436916
-
Glu
TTC
[Ensembl]
¡û
>C151039546
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
1436885
1436811
-
Glu
TTC
[Ensembl]
¡û
>C151065074
CP010274
Bacteroidota
Flavobacterium psychrophilum 5 [CP010274]
1582069
1581997
-
Glu
TTC
-
¡û
>C151065075
CP010274
Bacteroidota
Flavobacterium psychrophilum 5 [CP010274]
1581966
1581892
-
Glu
TTC
-
¡û
>W1511346601
JRHH01000003
Bacteroidota
Flavobacterium aquatile LMG 4008 [JRHH]
686022
686096
+
Glu
TTC
[ENA]
¡û
>W1511346602
JRHH01000003
Bacteroidota
Flavobacterium aquatile LMG 4008 [JRHH]
686138
686212
+
Glu
TTC
[ENA]
¡û
>W1511357169
JRWA01000007
Bacteroidota
Flavobacterium psychrophilum CSF-259-93 [JRWA]
281583
281511
-
Glu
TTC
[ENA]
¡û
>W1511357273
JRWD01000024
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
31562
31634
+
Glu
TTC
[ENA]
¡û
>W1511357274
JRWD01000024
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
31665
31739
+
Glu
TTC
[ENA]
¡û
>C161024489
CP010277
Bacteroidota
Flavobacterium psychrophilum VQ50 [CP010277]
1542469
1542397
-
Glu
TTC
-
¡û
>C161024490
CP010277
Bacteroidota
Flavobacterium psychrophilum VQ50 [CP010277]
1542366
1542292
-
Glu
TTC
-
¡û
>W1610062196
BCNG01000025
Bacteroidota
Flavobacterium psychrophilum [BCNG]
32756
32828
+
Glu
TTC
[ENA]
¡û
>W1610062197
BCNG01000025
Bacteroidota
Flavobacterium psychrophilum [BCNG]
32859
32933
+
Glu
TTC
[ENA]
¡û
>W1610752870
LNDX01000006
Bacteroidota
Flavobacteriaceae bacterium Ga0077528 [LNDX]
148588
148514
-
Glu
TTC
[ENA]
¡û
>W1610752871
LNDX01000006
Bacteroidota
Flavobacteriaceae bacterium Ga0077528 [LNDX]
148472
148398
-
Glu
TTC
[ENA]
¡û
>W1610764403
LNNF01000191
Bacteroidota
Flavobacterium psychrophilum [LNNF]
1368
1296
-
Glu
TTC
[ENA]
¡û
>W1610764404
LNNF01000191
Bacteroidota
Flavobacterium psychrophilum [LNNF]
1265
1191
-
Glu
TTC
[ENA]
¡û
>W1610772904
LNTP01000135
Bacteroidota
Flavobacterium psychrophilum [LNTP]
2896
2824
-
Glu
TTC
[ENA]
¡û
>W1610772905
LNTP01000135
Bacteroidota
Flavobacterium psychrophilum [LNTP]
2793
2719
-
Glu
TTC
[ENA]
¡û
>W1610772944
LNTQ01000124
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
49798
49870
+
Glu
TTC
[ENA]
¡û
>W1610772945
LNTQ01000124
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
49901
49975
+
Glu
TTC
[ENA]
¡û
>W1610895172
LRTL01000003
Bacteroidota
Flavobacterium psychrophilum [LRTL]
115816
115888
+
Glu
TTC
[ENA]
¡û
>W1610895173
LRTL01000003
Bacteroidota
Flavobacterium psychrophilum [LRTL]
115919
115993
+
Glu
TTC
[ENA]
¡û
>W1710059737
BCNG01000025
Bacteroidota
Flavobacterium psychrophilum [BCNG]
32756
32828
+
Glu
TTC
[ENA]
¡û
>W1710059738
BCNG01000025
Bacteroidota
Flavobacterium psychrophilum [BCNG]
32859
32933
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK