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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.442299 (136 seq.)
>W1710860282
LMCT01000013
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
9094
9166
+
Gln
CTG
[ENA]
¡û
>W1710860286
LMCT01000013
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
9548
9622
+
Gln
CTG
[ENA]
¡û
>W1710899498
LNIZ01000011
Actinomycetota
Trueperella bernardiae [LNIZ]
1278
1204
-
Gln
CTG
[ENA]
¡û
>W1711096130
LTHM01000049
Actinomycetota
Brevibacterium sp. HMSC063G07 [LTHM]
20210
20136
-
Gln
CTG
[ENA]
¡û
>W1711112292
LTXG01000053
Actinomycetota
Actinomyces sp. HMSC065F11 [LTXG]
262
188
-
Gln
CTG
[ENA]
¡û
>W1711183427
LWLA01000023
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
145033
144961
-
Gln
CTG
[ENA]
¡û
>W1711183431
LWLA01000023
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
144534
144460
-
Gln
CTG
[ENA]
¡û
>W1711184945
LWMY01000036
Actinomycetota
Trueperella sp. HMSC08H06 [LWMY]
29170
29244
+
Gln
CTG
[ENA]
¡û
>W1711185094
LWNB01000060
Actinomycetota
Trueperella sp. HMSC08B05 [LWNB]
562
488
-
Gln
CTG
[ENA]
¡û
>W1711187767
LWPT01000061
Actinomycetota
Brevibacterium sp. HMSC07C04 [LWPT]
21479
21405
-
Gln
CTG
[ENA]
¡û
>C171109545
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
1473402
1473328
-
Gln
CTG
-
¡û
>C171130131
LT635457
Actinomycetota
Actinomyces pacaensis Marseille-P2985 [LT635457]
46673
46747
+
Gln
CTG
-
¡û
>W131001260
AGWN01000005
Actinomycetota
Gleimia europaea ACS-120-V-Col10b [AGWN]
19857
19931
+
Gln
CTG
[ENA]
¡û
>W131168909
AREI01000040
Actinomycetota
Streptomyces sp. BoleA5 [AREI]
42343
42415
+
Gln
CTG
[ENA]
¡û
>WENV180008845
FLSB01179316
[FLSB] metagenome; saliva
83
157
+
Gln
CTG
[ENA]
¢þ
>WENV180024726
FTIJ01001219
[FTIJ] metagenome; soil
2440
2368
-
Gln
CTG
[ENA]
¢þ
>WENV180024731
FTIJ01001219
[FTIJ] metagenome; soil
1645
1571
-
Gln
CTG
[ENA]
¢þ
>WENV180028677
FTJE01746104
[FTJE] metagenome; soil
264
190
-
Gln
CTG
[ENA]
¢þ
>WENV180035398
FTKT01457729
[FTKT] metagenome; soil
24170
24098
-
Gln
CTG
[ENA]
¢þ
>WENV180035402
FTKT01457729
[FTKT] metagenome; soil
23694
23620
-
Gln
CTG
[ENA]
¢þ
>WENV180443835
OBWZ01000002
[OBWZ] human gut metagenome; faeces
514420
514346
-
Gln
CTG
[ENA]
¢þ
>WENV180484756
OBZI01003976
[OBZI] human gut metagenome; faeces
128
202
+
Gln
CTG
[ENA]
¢þ
>WENV180596610
OCPI01000133
[OCPI] human gut metagenome; faeces
13114
13040
-
Gln
CTG
[ENA]
¢þ
>WENV180708313
ODFJ01000948
[ODFJ] human metagenome; G_DNA_Tongue dorsum
5741
5815
+
Gln
CTG
[ENA]
¢þ
>WENV180757839
ODHW01002375
[ODHW] human metagenome; G_DNA_Tongue dorsum
3791
3865
+
Gln
CTG
[ENA]
¢þ
>WENV180792051
ODIW01000036
[ODIW] human metagenome; G_DNA_Tongue dorsum
54791
54865
+
Gln
CTG
[ENA]
¢þ
>WENV180794870
ODIZ01008545
[ODIZ] human metagenome; G_DNA_Tongue dorsum
178
104
-
Gln
CTG
[ENA]
¢þ
>WENV180811130
ODJM01051361
[ODJM] human metagenome; G_DNA_Buccal mucosa
91
165
+
Gln
CTG
[ENA]
¢þ
>WENV180816446
ODJP01014537
[ODJP] human metagenome; G_DNA_Tongue dorsum
171
97
-
Gln
CTG
[ENA]
¢þ
>WENV180861066
ODLE01000718
[ODLE] human metagenome; G_DNA_Tongue dorsum
13291
13217
-
Gln
CTG
[ENA]
¢þ
>WENV180878337
ODLV01040994
[ODLV] human metagenome; G_DNA_Tongue dorsum
86
160
+
Gln
CTG
[ENA]
¢þ
>WENV180881259
ODLZ01257493
[ODLZ] human metagenome; G_DNA_Tongue dorsum
155
81
-
Gln
CTG
[ENA]
¢þ
>WENV180900340
ODOJ01001209
[ODOJ] human metagenome; G_DNA_Tongue dorsum
11567
11493
-
Gln
CTG
[ENA]
¢þ
>WENV180920511
ODTH01007562
[ODTH] human metagenome; G_DNA_Tongue dorsum
2997
2923
-
Gln
CTG
[ENA]
¢þ
>WENV180932526
ODTP01081706
[ODTP] human metagenome; G_DNA_Tongue dorsum
335
409
+
Gln
CTG
[ENA]
¢þ
>WENV180960692
ODUM01135404
[ODUM] human metagenome; G_DNA_Tongue dorsum
13
87
+
Gln
CTG
[ENA]
¢þ
>WENV180967997
ODUT01006128
[ODUT] human metagenome; G_DNA_Tongue dorsum
914
988
+
Gln
CTG
[ENA]
¢þ
>WENV180979968
ODVC01028124
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
55
129
+
Gln
CTG
[ENA]
¢þ
>WENV180988901
ODVL01019251
[ODVL] human metagenome; G_DNA_Tongue dorsum
156
82
-
Gln
CTG
[ENA]
¢þ
>WENV181016664
ODWR01003935
[ODWR] human metagenome; G_DNA_Tongue dorsum
4851
4925
+
Gln
CTG
[ENA]
¢þ
>WENV181032990
ODXN01001856
[ODXN] human metagenome; G_DNA_Tongue dorsum
13
87
+
Gln
CTG
[ENA]
¢þ
>WENV181045052
ODXV01132493
[ODXV] human metagenome; G_DNA_Tongue dorsum
113
187
+
Gln
CTG
[ENA]
¢þ
>WENV181095357
OEBY01006785
[OEBY] human metagenome; G_DNA_Tongue dorsum
4382
4456
+
Gln
CTG
[ENA]
¢þ
>WENV181103431
OECT01135551
[OECT] human metagenome; G_DNA_Tongue dorsum
13
87
+
Gln
CTG
[ENA]
¢þ
>WENV181109356
OEEJ01030905
[OEEJ] human metagenome; G_DNA_Tongue dorsum
176
102
-
Gln
CTG
[ENA]
¢þ
>WENV181129459
OEFX01024900
[OEFX] human metagenome; G_DNA_Tongue dorsum
156
82
-
Gln
CTG
[ENA]
¢þ
>WENV181130849
OEFY01103492
[OEFY] human metagenome; G_DNA_Throat
131
57
-
Gln
CTG
[ENA]
¢þ
>WENV181151216
OEHW01027767
[OEHW] human metagenome; G_DNA_Tongue dorsum
144
70
-
Gln
CTG
[ENA]
¢þ
>WENV181217586
OFCJ01004356
[OFCJ] metagenome; Human gut stool
957
1031
+
Gln
CTG
[ENA]
¢þ
>WENV181218606
OFCN01000001
[OFCN] metagenome; Human gut stool
330922
330848
-
Gln
CTG
[ENA]
¢þ
>WENV181221916
OFDA01000001
[OFDA] metagenome; Human gut stool
971245
971319
+
Gln
CTG
[ENA]
¢þ
>WENV181809537
OGST01000456
[OGST] human gut metagenome; fecal sample 7 from infant 6
20037
19965
-
Gln
CTG
[ENA]
¢þ
>WENV181917314
OGYG01007508
[OGYG] human gut metagenome; faeces
2597
2523
-
Gln
CTG
[ENA]
¢þ
>WENV182407495
OIFD01000057
[OIFD] human gut metagenome; stool
83206
83134
-
Gln
CTG
[ENA]
¢þ
>W141241591
CAHK01000028
Actinomycetota
Brevibacterium senegalense JC43 [CAHK]
50137
50065
-
Gln
CTG
[ENA]
¡û
>WENV182636557
OJKZ01019942
[OJKZ] metagenome; surface
494
568
+
Gln
CTG
[ENA]
¢þ
>WENV182644260
OJLW01017053
[OJLW] metagenome; surface
719
647
-
Gln
CTG
[ENA]
¢þ
>WENV182667715
OJNI01009294
[OJNI] human gut metagenome; feces
2892
2820
-
Gln
CTG
[ENA]
¢þ
>WENV182810028
OJWV01001971
[OJWV] human gut metagenome; human gut
638
710
+
Gln
CTG
[ENA]
¢þ
>W141282786
JAIZ01000519
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
6227
6301
+
Gln
CTG
[ENA]
¡û
>WENV182857392
OKNX01000230
[OKNX] human gut metagenome; human gut
283
211
-
Gln
CTG
[ENA]
¢þ
>W141284163
JALQ01000002
Actinomycetota
Trueperella pyogenes MS249 [JALQ]
21057
21131
+
Gln
CTG
[ENA]
¡û
>WENV183712648
PDWI01108294
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
789
717
-
Gln
CTG
[ENA]
¢þ
>WENV170718867
LSQX01093108
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2285
2359
+
Gln
CTG
[ENA]
¢þ
>C181168828
CP028833
Actinomycetota
Trueperella pyogenes Arash114 [CP028833]
766930
766858
-
Gln
CTG
-
¡û
>C191114719
CP033902
Actinomycetota
Trueperella pyogenes TP1 [CP033902]
1027545
1027473
-
Gln
CTG
-
¡û
>C191114779
CP033904
Actinomycetota
Trueperella pyogenes TP3 [CP033904]
427145
427217
+
Gln
CTG
-
¡û
>C191127809
CP034587
Actinomycetota
Streptomyces luteoverticillatus CGMCC 15060 [CP034587]
5195722
5195794
+
Gln
CTG
-
¡û
>C191128005
CP034593
Actinomycetota
Flaviflexus ciconiae H23T48 [CP034593]
1167213
1167141
-
Gln
CTG
-
¡û
>C191211527
LR134476
Actinomycetota
Trueperella bialowiezensis NCTC13354 [LR134476]
1892480
1892552
+
Gln
CTG
-
¡û
>W141755541
JNWQ01000029
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
8551
8623
+
Gln
CTG
[ENA]
¡û
>W141755545
JNWQ01000029
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
8988
9062
+
Gln
CTG
[ENA]
¡û
>W141755659
JNWR01000046
Actinomycetota
Kitasatospora aureofaciens [JNWR]
7822
7896
+
Gln
CTG
[ENA]
¡û
>W141761771
JOAY01000021
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
8542
8614
+
Gln
CTG
[ENA]
¡û
>W141761774
JOAY01000021
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
8882
8956
+
Gln
CTG
[ENA]
¡û
>W141765003
JODB01003927
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
117
45
-
Gln
CTG
[ENA]
¡û
>W141765018
JODB01007452
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
1535
1461
-
Gln
CTG
[ENA]
¡û
>W141770026
JOGF01000051
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
51
125
+
Gln
CTG
[ENA]
¡û
>W141770062
JOGF01004087
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
111
39
-
Gln
CTG
[ENA]
¡û
>W141770110
JOGG01000035
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
62721
62647
-
Gln
CTG
[ENA]
¡û
>W141770161
JOGH01000012
Actinomycetota
Kitasatospora sp. NRRL B-11411 [JOGH]
97887
97813
-
Gln
CTG
[ENA]
¡û
>W141774365
JOJA01000008
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
8410
8484
+
Gln
CTG
[ENA]
¡û
>W141818512
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
222739
222667
-
Gln
CTG
[ENA]
¡û
>W141818516
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
222265
222191
-
Gln
CTG
[ENA]
¡û
>W141819669
JQMJ01000004
Actinomycetota
Streptacidiphilus rugosus AM-16 [JQMJ]
6170758
6170686
-
Gln
CTG
[ENA]
¡û
>W141819770
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
6162327
6162399
+
Gln
CTG
[ENA]
¡û
>W141819774
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
6162986
6163060
+
Gln
CTG
[ENA]
¡û
>W141819956
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
1638417
1638489
+
Gln
CTG
[ENA]
¡û
>W141819960
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
1638894
1638968
+
Gln
CTG
[ENA]
¡û
>W1910548003
FZOF01000008
Actinomycetota
Actinacidiphila glaucinigra CGMCC 4.1858 [FZOF]
119365
119293
-
Gln
CTG
[ENA]
¡û
>W1911494853
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
2473393
2473321
-
Gln
CTG
[ENA]
¡û
>W1911494857
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
2472930
2472856
-
Gln
CTG
[ENA]
¡û
>W1911596765
PNHK01000002
Actinomycetota
Brevibacterium paucivorans UMB1301 [PNHK]
398121
398193
+
Gln
CTG
[ENA]
¡û
>W1911597278
PNHU01000004
Actinomycetota
Gleimia hominis UMB0859 [PNHU]
32055
32129
+
Gln
CTG
[ENA]
¡û
>W1911597371
PNHW01000005
Actinomycetota
Gleimia europaea UMB0652 [PNHW]
34109
34181
+
Gln
CTG
[ENA]
¡û
>W1810073016
PEFQ01000001
Actinomycetota
Streptomyces sp. 1 [PEFQ]
5141702
5141776
+
Gln
CTG
[ENA]
¡û
>W1810085228
PESV01000001
Actinomycetota
Trueperella pyogenes Bu5 [PESV]
572002
572074
+
Gln
CTG
[ENA]
¡û
>W1810173009
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
5633452
5633524
+
Gln
CTG
[ENA]
¡û
>W1810187945
PKHY01000011
Actinomycetota
Trueperella bernardiae UMB0116 [PKHY]
1427
1355
-
Gln
CTG
[ENA]
¡û
>W1810189364
PKIZ01000007
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
56054
56128
+
Gln
CTG
[ENA]
¡û
>W1810394702
PYBW01000045
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
7288
7360
+
Gln
CTG
[ENA]
¡û
>W1810684563
QKYN01000103
Actinomycetota
Streptacidiphilus pinicola MMS16-CNU450 [QKYN]
172
244
+
Gln
CTG
[ENA]
¡û
>W1810694031
QLLT01000027
Actinomycetota
Kitasatospora sp. SolWspMP-SS2h [QLLT]
88223
88149
-
Gln
CTG
[ENA]
¡û
>W1810907959
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
6900783
6900855
+
Gln
CTG
[ENA]
¡û
>W1810907963
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
6901212
6901286
+
Gln
CTG
[ENA]
¡û
>C151015765
CP007003
Actinomycetota
Trueperella pyogenes TP8 [CP007003]
908183
908257
+
Gln
CTG
[Ensembl]
¡û
>C151026381
CP007519
Actinomycetota
Trueperella pyogenes TP6375 [CP007519]
767008
766934
-
Gln
CTG
[Ensembl]
¡û
>C151096865
CP012649
Actinomycetota
Trueperella pyogenes 2012CQ-ZSH [CP012649]
1517971
1518045
+
Gln
CTG
-
¡û
>W1510013936
BBPL01000006
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
153829
153901
+
Gln
CTG
[ENA]
¡û
>W1510013940
BBPL01000006
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
154488
154562
+
Gln
CTG
[ENA]
¡û
>W1510014103
BBPN01000031
Actinomycetota
Streptacidiphilus jiangxiensis NBRC 100920 [BBPN]
91702
91630
-
Gln
CTG
[ENA]
¡û
>W1510014225
BBPP01000024
Actinomycetota
Streptacidiphilus melanogenes NBRC 103184 [BBPP]
55450
55378
-
Gln
CTG
[ENA]
¡û
>W1510014325
BBPQ01000080
Actinomycetota
Streptacidiphilus anmyonensis NBRC 103185 [BBPQ]
27137
27065
-
Gln
CTG
[ENA]
¡û
>W1510015527
BBRB01000003
Actinomycetota
Demequina sediminicola NBRC 105855 [BBRB]
216449
216375
-
Gln
CTG
[ENA]
¡û
>W1510015590
BBRD01000001
Actinomycetota
Demequina aestuarii NBRC 106260 [BBRD]
848726
848800
+
Gln
CTG
[ENA]
¡û
>W1510015653
BBRE01000002
Actinomycetota
Demequina oxidasica NBRC 106264 [BBRE]
62077
62151
+
Gln
CTG
[ENA]
¡û
>W1510015703
BBRF01000002
Actinomycetota
Demequina aurantiaca NBRC 106265 [BBRF]
60753
60827
+
Gln
CTG
[ENA]
¡û
>W1510060388
CCXH01000016
Actinomycetota
Actinomyces polynesiensis MS2 [CCXH]
10818
10890
+
Gln
CTG
[ENA]
¡û
>W10116452
ADNU01000047
Actinomycetota
Brevibacterium mcbrellneri ATCC 49030 [ADNU]
12238
12310
+
Gln
CTG
[ENA]
¡û
>C10100473
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
1239323
1239249
-
Gln
CTG
[Ensembl]
¡û
>W1510544454
CSSZ01000007
Actinomycetota
Flaviflexus massiliensis SIT4 [CSSZ]
297704
297778
+
Gln
CTG
[ENA]
¡û
>C11111758
AP010968
Actinomycetota
Kitasatospora setae KM-6054 [AP010968]
5715335
5715409
+
Gln
CTG
[Ensembl]
¡û
>W1511311645
JPRF01000360
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
28900
28826
-
Gln
CTG
[ENA]
¡û
>W1511350995
JRMV01000281
Actinomycetota
Actinomyces sp. S6-Spd3 [JRMV]
115987
116061
+
Gln
CTG
[ENA]
¡û
>W11121121
ADNU01000047
Actinomycetota
Brevibacterium mcbrellneri ATCC 49030 [ADNU]
12238
12310
+
Gln
CTG
[ENA]
¡û
>W1511475419
JWDF01000001
Actinomycetota
Streptantibioticus cattleyicolor 1093_SCAT [JWDF]
164
90
-
Gln
CTG
[ENA]
¡û
>W1511590463
LBHA01000285
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
7849
7923
+
Gln
CTG
[ENA]
¡û
>W1511696808
LGDO01000446
Actinomycetota
Streptomyces sp. XY431 [LGDO]
7602
7674
+
Gln
CTG
[ENA]
¡û
>W1511696812
LGDO01000446
Actinomycetota
Streptomyces sp. XY431 [LGDO]
8033
8107
+
Gln
CTG
[ENA]
¡û
>W1610722628
LMCT01000013
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
9094
9166
+
Gln
CTG
[ENA]
¡û
>W1610722632
LMCT01000013
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
9548
9622
+
Gln
CTG
[ENA]
¡û
>W1610759901
LNIZ01000011
Actinomycetota
Trueperella bernardiae [LNIZ]
1278
1204
-
Gln
CTG
[ENA]
¡û
>W1710743647
LGYI01000013
Actinomycetota
Trueperella bernardiae [LGYI]
1127
1053
-
Gln
CTG
[ENA]
¡û
>W1710765807
LIPD01000002
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
669525
669597
+
Gln
CTG
[ENA]
¡û
>W1710765811
LIPD01000002
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
669954
670028
+
Gln
CTG
[ENA]
¡û
>W1710769535
LISX01000008
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
87559
87485
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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