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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.442504 (20 seq.)
>C171074600
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1419891
1419965
+
Val
CAC
-
¡û
>C171074652
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1376761
1376835
+
Val
CAC
-
¡û
>C171074704
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1372481
1372555
+
Val
CAC
-
¡û
>C171074756
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1419892
1419966
+
Val
CAC
-
¡û
>C171074808
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1380328
1380402
+
Val
CAC
-
¡û
>WENV183668704
ORJL010765926
[ORJL] groundwater metagenome; groundwater
501
427
-
Val
CAC
[ENA]
¢þ
>WENV183670882
ORJL010998869
[ORJL] groundwater metagenome; groundwater
78
4
-
Val
CAC
[ENA]
¢þ
>WENV183676724
ORJL011660835
[ORJL] groundwater metagenome; groundwater
1434
1360
-
Val
CAC
[ENA]
¢þ
>WENV183676728
ORJL011661947
[ORJL] groundwater metagenome; groundwater
2470
2396
-
Val
CAC
[ENA]
¢þ
>WENV170151959
CEOE01011146
[CEOE] marine metagenome genome assembly TARA_025_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3351
3277
-
Val
CAC
[ENA]
¢þ
>C191002672
AP018515
Alphaproteobacteria
Acetobacter orientalis FAN1 [AP018515]
323741
323815
+
Val
CAC
-
¡û
>W1810603351
QGLE01000003
Alphaproteobacteria
Zavarzinia aquatilis HR-AS [QGLE]
405944
406018
+
Val
CAC
[ENA]
¡û
>W1810603396
QGLF01000001
Alphaproteobacteria
Zavarzinia compransoris DSM 1231 [QGLF]
108906
108832
-
Val
CAC
[ENA]
¡û
>C151004020
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1376908
1376982
+
Val
CAC
[Ensembl]
¡û
>C151004147
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2035519
2035445
-
Val
CAC
[Ensembl]
¡û
>W1610040833
BAMX01000012
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
27846
27920
+
Val
CAC
[ENA]
¡û
>W1710038031
BAMX01000012
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
27846
27920
+
Val
CAC
[ENA]
¡û
>W1710624415
JOMQ01000005
Alphaproteobacteria
Acetobacter cibinongensis DsW_47 [JOMQ]
97923
97997
+
Val
CAC
[ENA]
¡û
>W1710624454
JOOY01000005
Alphaproteobacteria
Acetobacter orientalis [JOOY]
89129
89203
+
Val
CAC
[ENA]
¡û
>W1710624909
JOPK01000003
Alphaproteobacteria
Acetobacter orientalis [JOPK]
1795
1721
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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