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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.444314 (82 seq.)
>W1711579485
MNRT01000031
Bacillota
Clostridium sp. 29_15 [MNRT]
43735
43809
+
Asn
GTT
[ENA]
¡û
>W1711579490
MNRT01000043
Bacillota
Clostridium sp. 29_15 [MNRT]
169462
169388
-
Asn
GTT
[ENA]
¡û
>W1711902953
MZGV01000025
Bacillota
Clostridium oryzae [MZGV]
21038
20964
-
Asn
GTT
[ENA]
¡û
>W1711902957
MZGV01000032
Bacillota
Clostridium oryzae [MZGV]
192
266
+
Asn
GTT
[ENA]
¡û
>W1711902976
MZGV01000108
Bacillota
Clostridium oryzae [MZGV]
8057
7983
-
Asn
GTT
[ENA]
¡û
>C171030617
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1682659
1682585
-
Asn
GTT
-
¡û
>C171030618
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1682545
1682471
-
Asn
GTT
-
¡û
>C171030619
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1682430
1682356
-
Asn
GTT
-
¡û
>C171030647
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1443282
1443208
-
Asn
GTT
-
¡û
>WENV180094516
MTBK01012086
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
2042
2116
+
Asn
GTT
[ENA]
¢þ
>WENV180094519
MTBK01012086
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
2347
2421
+
Asn
GTT
[ENA]
¢þ
>WENV180134173
OATJ01056297
[OATJ] human gut metagenome; faeces
168
242
+
Asn
GTT
[ENA]
¢þ
>WENV180139595
OATT01000420
[OATT] human gut metagenome; faeces
101
175
+
Asn
GTT
[ENA]
¢þ
>WENV180143513
OATX01067890
[OATX] human gut metagenome; faeces
101
175
+
Asn
GTT
[ENA]
¢þ
>WENV180327069
OBKS01374900
[OBKS] human gut metagenome; human gut
1
75
+
Asn
GTT
[ENA]
¢þ
>WENV180329183
OBKV01000350
[OBKV] human gut metagenome; human gut
48
122
+
Asn
GTT
[ENA]
¢þ
>WENV180429203
OBWC01046369
[OBWC] human gut metagenome; faeces
103
29
-
Asn
GTT
[ENA]
¢þ
>WENV180433537
OBWJ01062019
[OBWJ] human gut metagenome; faeces
81
155
+
Asn
GTT
[ENA]
¢þ
>WENV180438378
OBWR01001658
[OBWR] human gut metagenome; faeces
1115
1041
-
Asn
GTT
[ENA]
¢þ
>WENV180445293
OBXA01003095
[OBXA] human gut metagenome; faeces
230
156
-
Asn
GTT
[ENA]
¢þ
>WENV180494497
OCAA01000336
[OCAA] human gut metagenome; faeces
43760
43834
+
Asn
GTT
[ENA]
¢þ
>WENV180494500
OCAA01000336
[OCAA] human gut metagenome; faeces
44067
44141
+
Asn
GTT
[ENA]
¢þ
>WENV180494655
OCAA01000658
[OCAA] human gut metagenome; faeces
27189
27115
-
Asn
GTT
[ENA]
¢þ
>WENV180538760
OCHO01032642
[OCHO] human gut metagenome; human gut
217
291
+
Asn
GTT
[ENA]
¢þ
>WENV180541600
OCHR01231991
[OCHR] human gut metagenome; human gut
108
34
-
Asn
GTT
[ENA]
¢þ
>WENV180599342
OCPP01000579
[OCPP] human gut metagenome; faeces
25550
25476
-
Asn
GTT
[ENA]
¢þ
>WENV180599532
OCPP01001668
[OCPP] human gut metagenome; faeces
5267
5193
-
Asn
GTT
[ENA]
¢þ
>WENV180599535
OCPP01001668
[OCPP] human gut metagenome; faeces
4962
4888
-
Asn
GTT
[ENA]
¢þ
>WENV180599655
OCPP01002928
[OCPP] human gut metagenome; faeces
6913
6839
-
Asn
GTT
[ENA]
¢þ
>WENV180626172
OCQL01203699
[OCQL] human gut metagenome; human gut
152
78
-
Asn
GTT
[ENA]
¢þ
>WENV180634050
OCRA01156913
[OCRA] human gut metagenome; human gut
257
183
-
Asn
GTT
[ENA]
¢þ
>WENV180941749
ODTZ01013187
[ODTZ] human metagenome; G_DNA_Stool
426
500
+
Asn
GTT
[ENA]
¢þ
>WENV180942637
ODTZ01245494
[ODTZ] human metagenome; G_DNA_Stool
100
174
+
Asn
GTT
[ENA]
¢þ
>WENV181421268
OGCN01023221
[OGCN] human gut metagenome; human gut
2151
2077
-
Asn
GTT
[ENA]
¢þ
>WENV181520466
OGHD01002213
[OGHD] metagenome; Human gut stool
7448
7374
-
Asn
GTT
[ENA]
¢þ
>WENV181553051
OGIQ01001220
[OGIQ] metagenome; Human gut stool
2019
2093
+
Asn
GTT
[ENA]
¢þ
>WENV181566341
OGJI01023918
[OGJI] metagenome; Human gut stool
316
390
+
Asn
GTT
[ENA]
¢þ
>WENV181572347
OGJQ01002439
[OGJQ] metagenome; Human gut stool
81
155
+
Asn
GTT
[ENA]
¢þ
>W141167932
AXUN02000066
Bacillota
Youngiibacter fragilis 232.1 [AXUN]
53
127
+
Asn
GTT
[ENA]
¡û
>W141167936
AXUN02000095
Bacillota
Youngiibacter fragilis 232.1 [AXUN]
5326
5252
-
Asn
GTT
[ENA]
¡û
>WENV181699164
OGPF01015429
[OGPF] human gut metagenome; faeces
373
447
+
Asn
GTT
[ENA]
¢þ
>WENV181793887
OGRR01019526
[OGRR] human gut metagenome; faeces
186
260
+
Asn
GTT
[ENA]
¢þ
>WENV181875660
OGXC01000029
[OGXC] human gut metagenome; faeces
112550
112476
-
Asn
GTT
[ENA]
¢þ
>WENV181918517
OGYH01004983
[OGYH] human gut metagenome; faeces
101
175
+
Asn
GTT
[ENA]
¢þ
>WENV181919533
OGYI01001167
[OGYI] human gut metagenome; faeces
3967
4041
+
Asn
GTT
[ENA]
¢þ
>WENV181982323
OHAG01056134
[OHAG] human gut metagenome; faeces
450
524
+
Asn
GTT
[ENA]
¢þ
>WENV182225753
OHRD01040605
[OHRD] human gut metagenome; feces
547
473
-
Asn
GTT
[ENA]
¢þ
>WENV182300701
OHWM01040089
[OHWM] human gut metagenome; feces
311
237
-
Asn
GTT
[ENA]
¢þ
>WENV182656097
OJMJ01000530
[OJMJ] human gut metagenome; feces
18514
18440
-
Asn
GTT
[ENA]
¢þ
>W141265546
CCFI01000011
Bacillota
Clostridium jeddahitimonense CL-2 [CCFI]
154412
154486
+
Asn
GTT
[ENA]
¡û
>W141265586
CCFI01000018
Bacillota
Clostridium jeddahitimonense CL-2 [CCFI]
52
126
+
Asn
GTT
[ENA]
¡û
>W141267525
CCNP01000011
Bacillota
Clostridium jeddahitimonense CL-2 [CCNP]
154412
154486
+
Asn
GTT
[ENA]
¡û
>W141267565
CCNP01000018
Bacillota
Clostridium jeddahitimonense CL-2 [CCNP]
52
126
+
Asn
GTT
[ENA]
¡û
>WENV182725836
OJPT01030528
[OJPT] human gut metagenome; stool sample
540
466
-
Asn
GTT
[ENA]
¢þ
>WENV182871918
OKRV01000850
[OKRV] human gut metagenome; faeces
20052
19978
-
Asn
GTT
[ENA]
¢þ
>WENV182874675
OKRW01021737
[OKRW] human gut metagenome; faeces
1819
1745
-
Asn
GTT
[ENA]
¢þ
>WENV183128957
OLNZ01033322
[OLNZ] human gut metagenome; faeces
389
463
+
Asn
GTT
[ENA]
¢þ
>WENV183132299
OLOB01001119
[OLOB] human gut metagenome; faeces
5677
5603
-
Asn
GTT
[ENA]
¢þ
>WENV183187178
OLPO01007711
[OLPO] human gut metagenome; faeces
4524
4450
-
Asn
GTT
[ENA]
¢þ
>WENV183197089
OLPU01013232
[OLPU] human gut metagenome; faeces
110
184
+
Asn
GTT
[ENA]
¢þ
>WENV183228044
OLQQ01016053
[OLQQ] human gut metagenome; faeces
919
845
-
Asn
GTT
[ENA]
¢þ
>WENV183266551
OLRT01004428
[OLRT] human gut metagenome; faeces
6914
6840
-
Asn
GTT
[ENA]
¢þ
>WENV183321441
OLVW01026160
[OLVW] human gut metagenome; faeces
1432
1358
-
Asn
GTT
[ENA]
¢þ
>WENV183323291
OLVX01039343
[OLVX] human gut metagenome; faeces
75
1
-
Asn
GTT
[ENA]
¢þ
>WENV183327425
OLWA01000645
[OLWA] human gut metagenome; faeces
5681
5607
-
Asn
GTT
[ENA]
¢þ
>WENV183493687
OMGJ01001436
[OMGJ] human gut metagenome; human gut
10393
10319
-
Asn
GTT
[ENA]
¢þ
>WENV183506640
OMGY01001767
[OMGY] human gut metagenome; human gut
4882
4808
-
Asn
GTT
[ENA]
¢þ
>WENV183574674
OOCH01048652
[OOCH] human gut metagenome; human gut
473
399
-
Asn
GTT
[ENA]
¢þ
>WENV183589329
OOCW01000452
[OOCW] human gut metagenome; human gut
183
257
+
Asn
GTT
[ENA]
¢þ
>WENV183596096
OODD01017242
[OODD] human gut metagenome; human gut
633
707
+
Asn
GTT
[ENA]
¢þ
>WENV183607694
OODO01035984
[OODO] human gut metagenome; human gut
690
616
-
Asn
GTT
[ENA]
¢þ
>WENV183751112
PPYE01003016
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
5377
5303
-
Asn
GTT
[ENA]
¢þ
>WENV183751366
PPYE01009958
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
78
4
-
Asn
GTT
[ENA]
¢þ
>WENV183751455
PPYE01013618
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1857
1783
-
Asn
GTT
[ENA]
¢þ
>C151014194
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1401373
1401447
+
Asn
GTT
[Ensembl]
¡û
>C151014195
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1401487
1401561
+
Asn
GTT
[Ensembl]
¡û
>C151014222
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1648873
1648947
+
Asn
GTT
[Ensembl]
¡û
>W1610099901
CYYT01000018
Bacillota
Clostridium disporicum [CYYT]
68848
68774
-
Asn
GTT
[ENA]
¡û
>WENV084805
BABA01015513
Gut microbiome of Human (healthy human sample F2-Y, Child, Female)
426
502
+
Asn
GTT
[ENA]
>W1710102656
CYYT01000018
Bacillota
Clostridium disporicum [CYYT]
68848
68774
-
Asn
GTT
[ENA]
¡û
>W1710587175
FQXU01000014
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
36
110
+
Asn
GTT
[ENA]
¡û
>W1710587176
FQXU01000018
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
74144
74070
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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